Contig 006441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013H12Sequence492006441 (2)ref|XP_010536911.1|2e-37PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Tarenaya hassleri725006441 (2)ref|XP_009622205.1|1e-43PREDICTED: cold-inducible RNA-binding protein {ECO:0000303|PubMed:10817911} [Ni

Alignment

This contig is upended


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rJMSF013H12-                                                                    GA
                      ____________________________________________________________
consensus                                                                       GA
 
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rJMSF013H12-          AATTCAGTTCAAAACCTGGATGAAAACTGGTTATTGACATAGGCTCCATCTCAACTAAAA
                      ____________________________________________________________
consensus             AATTCAGTTCAAAACCTGGATGAAAACTGGTTATTGACATAGGCTCCATCTCAACTAAAA
 
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rJMSF013H12-          GACTAAGCGAAGCAGGGATAGCTCTGATACCAAATTGAAACATGTGCTCCATTGCAACTA
                      ____________________________________________________________
consensus             GACTAAGCGAAGCAGGGATAGCTCTGATACCAAATTGAAACATGTGCTCCATTGCAACTA
 
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rJMSF013H12-          AATGCCTACTGATAGTTGGACTGTACATTTATGTTTATATATTATATTATATGCCCAACA
                      ____________________________________________________________
consensus             AATGCCTACTGATAGTTGGACTGTACATTTATGTTTATATATTATATTATATGCCCAACA
 
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rJMSF013H12-          CTGACGCTGGAGTAGGCTGCAGGTTAACTGCCAATGAAAAGGATCAGAAGAAAGATGTTT
                      ____________________________________________________________
consensus             CTGACGCTGGAGTAGGCTGCAGGTTAACTGCCAATGAAAAGGATCAGAAGAAAGATGTTT
 
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rJMSF013H12-          ACAGCACCAGTCCAAAGCTTATTGATTCTCCTCCTGTATAGGAGATGTTTTTGTTTCCGA
                      ____________________________________________________________
consensus             ACAGCACCAGTCCAAAGCTTATTGATTCTCCTCCTGTATAGGAGATGTTTTTGTTTCCGA
 
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rJMSF013H12-          AGGGGGGCCACATGTCTTTACATAACCACCGAAATCCTTTTTCCGAAGCTTCGCTAGATC
JMSF013H12+                                                           CTTCGCTAGATC
                      ____________________________________________________________
consensus             AGGGGGGCCACATGTCTTTACATAACCACCGAAATCCTTTTTCCGAAGCTTCGCTAGATC
 
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rJMSF013H12-          TACATGGATTACCCTGCCATCGAAGTACTTGGAATCCATGTGTTCTAGGGCGAGCATGGC
JMSF013H12+           TACATGGATTACCCTGCCATCGAAGTACTTGGAATCCATGTGTTCTAGGGCGAGCATGGC
                      ____________________________________________________________
consensus             TACATGGATTACCCTGCCATCGAAGTACTTGGAATCCATGTGTTCTAGGGCGAGCATGGC
 
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rJMSF013H12-          ATGTTCTTGAGATGTGTATTGGATAAATGCGTATCCCCTTGATGTCTTTGATCCTCTATC
JMSF013H12+           ATGTTCTTGAGATGTGTATTGGATAAATGCGTATCCCCTTGATGTCTTTGATCCTCTATC
                      ____________________________________________________________
consensus             ATGTTCTTGAGATGTGTATTGGATAAATGCGTATCCCCTTGATGTCTTTGATCCTCTATC
 
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rJMSF013H12-          CTTGACAATCTTAACTTCAGCTATCTGACCGAACGTTGAAAATTCCTTCATCAAATGATT
JMSF013H12+           CTTGACAATCTTAACTTCAGCTATCTGACCGAACGTTGAAAATTCCTTCATCAAATGATT
                      ____________________________________________________________
consensus             CTTGACAATCTTAACTTCAGCTATCTGACCGAACGTTGAAAATTCCTTCATCAAATGATT
 
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rJMSF013H12-          TTCATCAGTGGTATATGGCAAATTGCTAACCATAATCTTGCTGGCAAGAGGGTAACTGTG
JMSF013H12+           TTCATCAGTGGTATATGGCAAATTGCTAACCATAATCTTGCTGGCAAGAGGGTAACTGTG
                      ____________________________________________________________
consensus             TTCATCAGTGGTATATGGCAAATTGCTAACCATAATCTTGCTGGCAAGAGGGTAACTGTG
 
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rJMSF013H12-          AATAGAAGCGTGGATTCTCGTTCTCAAGGAGCTAGGGCGGAATGAACACGATGAGGGCGG
JMSF013H12+           AATAGAAGCGTGGATTCTCGTTCTCAAGGAGCTAGGGCGGAATGAACACGATGAGGGCGG
                      ____________________________________________________________
consensus             AATAGAAGCGTGGATTCTCGTTCTCAAGGAGCTAGGGCGGAATGAACACGATGAGGGCGG
 
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rJMSF013H12-          CGCAACTATCGGCCGGGAAACTTGAAGCGGAAGTGCCGGAGGCGGA              
JMSF013H12+           CGCAACTATCGGCCGGGAAACTTGAAGCGGAAGTGCCGGAGGCGGAGAAAGGCCTGTCCA
                      ____________________________________________________________
consensus             CGCAACTATCGGCCGGGAAACTTGAAGCGGAAGTGCCGGAGGCGGAGAAAGGCCTGTCCA
 
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JMSF013H12+           GATGCTCTTCGCCATTTCACGATGAAGATCCGATTACTAGCCGCTTCAGCGAAGGGGAGC
                      ____________________________________________________________
consensus             GATGCTCTTCGCCATTTCACGATGAAGATCCGATTACTAGCCGCTTCAGCGAAGGGGAGC
 
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JMSF013H12+           GGTGAAGAAGAGCAGCAGCATATCCTCCTACCCGCTTGCAAAATCAAGAAGAATTACTTC
                      ____________________________________________________________
consensus             GGTGAAGAAGAGCAGCAGCATATCCTCCTACCCGCTTGCAAAATCAAGAAGAATTACTTC