Contig 006441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013H12Sequence492006441 (2)ref|XP_010536911.1|2e-37PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Tarenaya hassleri725006441 (2)ref|XP_009622205.1|1e-43PREDICTED: cold-inducible RNA-binding protein {ECO:0000303|PubMed:10817911} [Ni

Alignment

This contig is upended


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rJMSF013H12- GA
                      ____________________________________________________________
consensus GA
 
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rJMSF013H12- AATTCAGTTCAAAACCTGGATGAAAACTGGTTATTGACATAGGCTCCATCTCAACTAAAA
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consensus AATTCAGTTCAAAACCTGGATGAAAACTGGTTATTGACATAGGCTCCATCTCAACTAAAA
 
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rJMSF013H12- GACTAAGCGAAGCAGGGATAGCTCTGATACCAAATTGAAACATGTGCTCCATTGCAACTA
                      ____________________________________________________________
consensus GACTAAGCGAAGCAGGGATAGCTCTGATACCAAATTGAAACATGTGCTCCATTGCAACTA
 
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rJMSF013H12- AATGCCTACTGATAGTTGGACTGTACATTTATGTTTATATATTATATTATATGCCCAACA
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consensus AATGCCTACTGATAGTTGGACTGTACATTTATGTTTATATATTATATTATATGCCCAACA
 
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rJMSF013H12- CTGACGCTGGAGTAGGCTGCAGGTTAACTGCCAATGAAAAGGATCAGAAGAAAGATGTTT
                      ____________________________________________________________
consensus CTGACGCTGGAGTAGGCTGCAGGTTAACTGCCAATGAAAAGGATCAGAAGAAAGATGTTT
 
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rJMSF013H12- ACAGCACCAGTCCAAAGCTTATTGATTCTCCTCCTGTATAGGAGATGTTTTTGTTTCCGA
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consensus ACAGCACCAGTCCAAAGCTTATTGATTCTCCTCCTGTATAGGAGATGTTTTTGTTTCCGA
 
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rJMSF013H12- AGGGGGGCCACATGTCTTTACATAACCACCGAAATCCTTTTTCCGAAGCTTCGCTAGATC
JMSF013H12+ CTTCGCTAGATC
                      ____________________________________________________________
consensus AGGGGGGCCACATGTCTTTACATAACCACCGAAATCCTTTTTCCGAAGCTTCGCTAGATC
 
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rJMSF013H12- TACATGGATTACCCTGCCATCGAAGTACTTGGAATCCATGTGTTCTAGGGCGAGCATGGC
JMSF013H12+ TACATGGATTACCCTGCCATCGAAGTACTTGGAATCCATGTGTTCTAGGGCGAGCATGGC
                      ____________________________________________________________
consensus TACATGGATTACCCTGCCATCGAAGTACTTGGAATCCATGTGTTCTAGGGCGAGCATGGC
 
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rJMSF013H12- ATGTTCTTGAGATGTGTATTGGATAAATGCGTATCCCCTTGATGTCTTTGATCCTCTATC
JMSF013H12+ ATGTTCTTGAGATGTGTATTGGATAAATGCGTATCCCCTTGATGTCTTTGATCCTCTATC
                      ____________________________________________________________
consensus ATGTTCTTGAGATGTGTATTGGATAAATGCGTATCCCCTTGATGTCTTTGATCCTCTATC
 
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rJMSF013H12- CTTGACAATCTTAACTTCAGCTATCTGACCGAACGTTGAAAATTCCTTCATCAAATGATT
JMSF013H12+ CTTGACAATCTTAACTTCAGCTATCTGACCGAACGTTGAAAATTCCTTCATCAAATGATT
                      ____________________________________________________________
consensus CTTGACAATCTTAACTTCAGCTATCTGACCGAACGTTGAAAATTCCTTCATCAAATGATT
 
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rJMSF013H12- TTCATCAGTGGTATATGGCAAATTGCTAACCATAATCTTGCTGGCAAGAGGGTAACTGTG
JMSF013H12+ TTCATCAGTGGTATATGGCAAATTGCTAACCATAATCTTGCTGGCAAGAGGGTAACTGTG
                      ____________________________________________________________
consensus TTCATCAGTGGTATATGGCAAATTGCTAACCATAATCTTGCTGGCAAGAGGGTAACTGTG
 
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rJMSF013H12- AATAGAAGCGTGGATTCTCGTTCTCAAGGAGCTAGGGCGGAATGAACACGATGAGGGCGG
JMSF013H12+ AATAGAAGCGTGGATTCTCGTTCTCAAGGAGCTAGGGCGGAATGAACACGATGAGGGCGG
                      ____________________________________________________________
consensus AATAGAAGCGTGGATTCTCGTTCTCAAGGAGCTAGGGCGGAATGAACACGATGAGGGCGG
 
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rJMSF013H12- CGCAACTATCGGCCGGGAAACTTGAAGCGGAAGTGCCGGAGGCGGA
JMSF013H12+ CGCAACTATCGGCCGGGAAACTTGAAGCGGAAGTGCCGGAGGCGGAGAAAGGCCTGTCCA
                      ____________________________________________________________
consensus CGCAACTATCGGCCGGGAAACTTGAAGCGGAAGTGCCGGAGGCGGAGAAAGGCCTGTCCA
 
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JMSF013H12+ GATGCTCTTCGCCATTTCACGATGAAGATCCGATTACTAGCCGCTTCAGCGAAGGGGAGC
                      ____________________________________________________________
consensus GATGCTCTTCGCCATTTCACGATGAAGATCCGATTACTAGCCGCTTCAGCGAAGGGGAGC
 
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JMSF013H12+ GGTGAAGAAGAGCAGCAGCATATCCTCCTACCCGCTTGCAAAATCAAGAAGAATTACTTC
                      ____________________________________________________________
consensus GGTGAAGAAGAGCAGCAGCATATCCTCCTACCCGCTTGCAAAATCAAGAAGAATTACTTC