| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004P22 | Sequence | 199 | 006439 (6) | 682 | 008326 (6) | emb|CBI16416.3| | 2e-44 | unnamed protein product [Vitis vinifera] | |||
| JMFF029E07 | Sequence | 419 | 006439 (6) | 741 | 008326 (6) | ref|XP_009618593.1| | 1e-46 | PREDICTED: transcription factor bHLH122-like [Nicotiana tomentosiformis] ref|XP_ | |||
| JMFF043M23 | Sequence | 645 | 006439 (6) | 511 | 008326 (6) | emb|CBI16416.3| | 8e-40 | unnamed protein product [Vitis vinifera] | |||
| JMSF012P18 | Sequence | 256 | 006439 (6) | 652 | 005414 (2) | ref|XP_010651260.1| | 4e-24 | PREDICTED: transcription factor bHLH130-like isoform X1 [Vitis vinifera] | |||
| JMSF029P04 | Sequence | 482 | 006439 (6) | 678 | 008326 (6) | ref|XP_009618593.1| | 7e-47 | PREDICTED: transcription factor bHLH122-like [Nicotiana tomentosiformis] ref|XP_ | |||
| JMSF044M02 | Sequence | 444 | 006439 (6) | 701 | 008326 (6) | ref|XP_009618593.1| | 8e-47 | PREDICTED: transcription factor bHLH122-like [Nicotiana tomentosiformis] ref|XP_ | |||
This contig is upended
. : . : . : . : . : . :
JMFF043M23+ CGGATCG
____________________________________________________________
consensus CGGATCG
. : . : . : . : . : . :
JMFF043M23+ AAACCGCGTCAGGCAAGAACTCATCTGTTGCTGCTGACACCGAGTCTGATCCATGAAAAC
____________________________________________________________
consensus AAACCGCGTCAGGCAAGAACTCATCTGTTGCTGCTGACACCGAGTCTGATCCATGAAAAC
. : . : . : . : . : . :
JMFF043M23+ TCGTTTCTTTTTTTACCTTTTTTTTTTATTTTCCCAATGCCGATTCTTATAATTCTTATA
____________________________________________________________
consensus TCGTTTCTTTTTTTACCTTTTTTTTTTATTTTCCCAATGCCGATTCTTATAATTCTTATA
. : . : . : . : . : . :
JMFF043M23+ GCACCCAGACCCAAAAAATGGCAGAAAAGCGATGCTCAAAGCCTCAAATCACATCAAAAA
JMSF029P04+ AAAA
____________________________________________________________
consensus GCACCCAGACCCAAAAAATGGCAGAAAAGCGATGCTCAAAGCCTCAAATCACATCAAAAA
. : . : . : . : . : . :
JMFF043M23+ AATTGAGAATTTTTTAGAAACCCGAAATTCTATAGATAACAAAATTTTAAGAATCAAGGT
JMSF029P04+ AATTGNGAATTTTTTNGAAACCCGAAATTNTTTNGNTNACNAAATTTTTAGAATCNAGGT
____________________________________________________________
consensus AATTGAGAATTTTTTAGAAACCCGAAATTCTTTAGATAACAAAATTTTTAGAATCAAGGT
. : . : . : . : . : . :
JMFF043M23+ TTAAAAAAT-AAAAAAAAAAAACAGGTTTTTTAGTTTTTATTCAAGAAACTCGAGTACCC
JMFF029E07+ AAAAAAAAAAAACAGGTTTTTTAGTTTTTATTCAAGAAACTCGAGTACCC
JMSF044M02+ TTTAAAAATNAAAAAAAAAAAACAGGTTTTTTAGTTTTTATTCAAGAAACTCGAGTACCC
JMSF029P04+ TTNAAAAATAAAAAAAAAAAAACAGGTTTTTTAGTTTTTATTCAAGAAACTCGAGTACCC
____________________________________________________________
consensus TTTAAAAATAAAAAAAAAAAAACAGGTTTTTTAGTTTTTATTCAAGAAACTCGAGTACCC
. : . : . : . : . : . :
JMFF043M23+ ACAACAGTCAACACTCTAGTACTTTCCTCTTTGTCTTAAGTAAAAAGAAATTTATTAGGT
JMFF029E07+ ACAACAGTCAACACTCTAGTACTTTCCTCTTTGTCTTAAGTAAAAAGAAATTTATTAGGT
JMSF044M02+ ACAACAGTCAACACTCTAGTACTTTCCTCTTTGTCTTAAGTAAAAAGAAATTTATTAGGT
JMSF029P04+ ACAACAGTCAACACTCTAGTACTTTCCTCTTTGTCTTAAGTAAAAAGAAATTTATTAGGT
____________________________________________________________
consensus ACAACAGTCAACACTCTAGTACTTTCCTCTTTGTCTTAAGTAAAAAGAAATTTATTAGGT
. : . : . : . : . : . :
JMFF043M23+ GTTTGTGGTGAAATTATGAATCCCAGAAAAGAGGTGAAGGCAAAACAGAAGAGCGATGAA
JMFF029E07+ GTTTGTGGTGAAATTATGAATCCCAGAAAAGAGGTGAAGGCAAAACAGAAGAGCGATGAA
JMSF044M02+ GTTTGTGGTGAAATTATGAATCCCAGAAAAGAGGTGAAGGCAAAACAGAAGAGCGATGAA
JMSF029P04+ GTTTGTGGTGAAATTATGAATCCCAGAAAAGAGGTGAAGGCAAAACAGAAGAGCGATGAA
JMSF012P18+ ACAGAAGAGCGATGAA
____________________________________________________________
consensus GTTTGTGGTGAAATTATGAATCCCAGAAAAGAGGTGAAGGCAAAACAGAAGAGCGATGAA
. : . : . : . : . : . :
JMFF043M23+ AACCAGTGAAACAGAATCTTCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
JMFF004P22+ TCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
JMFF029E07+ AACCAGTGAAACAGAATCTTCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
JMSF044M02+ AACCAGTGAAACAGAATCTTCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
JMSF029P04+ AACCAGTGAAACAGAATCTTCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
JMSF012P18+ AACCAGTGAAACAGAATCTTCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
____________________________________________________________
consensus AACCAGTGAAACAGAATCTTCAGACACAGAGGAGTAAACAGTGAAAAGATACAGAAAACA
. : . : . : . : . : . :
JMFF043M23+ CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
JMFF004P22+ CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
JMFF029E07+ CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
JMSF044M02+ CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
JMSF029P04+ CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
JMSF012P18+ CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
____________________________________________________________
consensus CTACTTTTCCCTATTAATGGAGAAGGGAAGGTGGCGGAGGCGGCGGCGGAGGCGGAGGAG
. : . : . : . : . : . :
JMFF043M23+ AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
JMFF004P22+ AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
JMFF029E07+ AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
JMSF044M02+ AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
JMSF029P04+ AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
JMSF012P18+ AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
____________________________________________________________
consensus AAGGTGGCGGTGGGGATGGGGGAGTGGAAAACTGTAGTAAGCTAGGCTAGTCGCCAATGG
. : . : . : . : . : . :
JMFF043M23+ GAAGTCCGGCGAAGCAGATATCACGGACTGGCTTTCTT
JMFF004P22+ GAAGTCCGGCGAAGCAGATATCACGGACTGGCTTTCTT
JMFF029E07+ GAAGTCCGGCGAAGCAGATATCACGGACTGGCTTTCTT
JMSF044M02+ GAAGTCC
JMSF029P04+ GAAGTCCGGCGAAGCAGATATCACGGACTGGCTTTCTT
JMSF012P18+ GAAGTCCGGCGAAGCAGATATCACGGACTGGCTTTCTTAATGCACTTTTAAAAAATCACC
____________________________________________________________
consensus GAAGTCCGGCGAAGCAGATATCACGGACTGGCTTTCTTAATGCACTTTTAAAAAATCACC