Contig 006436:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012K03Sequence525006436 (2)ref|XP_009610857.1|245PREDICTED: U1 small nuclear ribonucleoprotein A [Nicotiana tomentosiformis]704006436 (2)emb|CDP17118.1|7e-108unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF012K03-                                                    GTTACATCACAGCTGCTC
                      ____________________________________________________________
consensus                                                       GTTACATCACAGCTGCTC
 
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rJMSF012K03-          AACATCCATATTCTAGTATCAAAACATCAATTAATTCTACATGCAGATAACTTGTTTACC
                      ____________________________________________________________
consensus             AACATCCATATTCTAGTATCAAAACATCAATTAATTCTACATGCAGATAACTTGTTTACC
 
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rJMSF012K03-          AGTTTACTTTTTTGCATATGTAATCAGCATGGCGTTGTCGCCCATTATCTTGAATCCCTG
                      ____________________________________________________________
consensus             AGTTTACTTTTTTGCATATGTAATCAGCATGGCGTTGTCGCCCATTATCTTGAATCCCTG
 
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rJMSF012K03-          GAGTGCCTGCATTGCCACAGTGGATTGCATCTCATCTCCGTATTCGACAAAAGCAATTCC
                      ____________________________________________________________
consensus             GAGTGCCTGCATTGCCACAGTGGATTGCATCTCATCTCCGTATTCGACAAAAGCAATTCC
 
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rJMSF012K03-          AGGTTTTGCTTCCACCATTCTGACTTCCTTAAACCCAGTATATTGAGAAAAGAGCATTTG
                      ____________________________________________________________
consensus             AGGTTTTGCTTCCACCATTCTGACTTCCTTAAACCCAGTATATTGAGAAAAGAGCATTTG
 
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rJMSF012K03-          GAGCATCATGGGAGTTGTCTGATGCGGAAGATTCTGAACAAACAATATCTTGTTTGGAGG
                      ____________________________________________________________
consensus             GAGCATCATGGGAGTTGTCTGATGCGGAAGATTCTGAACAAACAATATCTTGTTTGGAGG
 
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rJMSF012K03-          AGCAGGAGCTTCTGGTACCGCAGCAATTGCTCCACCCATATATGGTATCTGTGATAGAGG
                      ____________________________________________________________
consensus             AGCAGGAGCTTCTGGTACCGCAGCAATTGCTCCACCCATATATGGTATCTGTGATAGAGG
 
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rJMSF012K03-          AGGGGTTGCACCGTAAGTGCCAACATATGCAGGATTCAGACCCATTCCGGCTTGATTAGA
                      ____________________________________________________________
consensus             AGGGGTTGCACCGTAAGTGCCAACATATGCAGGATTCAGACCCATTCCGGCTTGATTAGA
 
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rJMSF012K03-          GTCATGCTGCTCCTTTTTCTTCTTTCCTCTGTCTTCATGCTTCTTTCTTTTTTCTCGAGG
                      ____________________________________________________________
consensus             GTCATGCTGCTCCTTTTTCTTCTTTCCTCTGTCTTCATGCTTCTTTCTTTTTTCTCGAGG
 
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rJMSF012K03-          TACAAAAGTACCGTCTGCCTTGGCTACAATATCTGATTTTGTCTTTGCAAATTGTATCCT
                      ____________________________________________________________
consensus             TACAAAAGTACCGTCTGCCTTGGCTACAATATCTGATTTTGTCTTTGCAAATTGTATCCT
 
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rJMSF012K03-          CATAGGCTTATCATAGAATGGGAATCCCTGCATTTGACGAAGTGCATTGGTAGCAGATGA
JMSF012K03+           CATAGGCTTATCATAGAATGGGAATCCCTGCATTTGACGAAGTGCATTGGTAGCAGATGA
                      ____________________________________________________________
consensus             CATAGGCTTATCATAGAATGGGAATCCCTGCATTTGACGAAGTGCATTGGTAGCAGATGA
 
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rJMSF012K03-          GACATCCTCAAAGATAACCCAGGCTTGACCTTTGTGTTTTAGGGTTTTGAACGCTAAAAC
JMSF012K03+           GACATCCTCAAAGATAACCCAGGCTTGACCTTTGTGTTTTAGGGTTTTGAACGCTAAAAC
                      ____________________________________________________________
consensus             GACATCCTCAAAGATAACCCAGGCTTGACCTTTGTGTTTTAGGGTTTTGAACGCTAAAAC
 
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rJMSF012K03-          CTCCAAAATCTTCCCGAACTGCGAGA                                  
JMSF012K03+           CTCCAAAATCTTCCCGAACTGCGAGAACACGGCGTTTAGCGACTTCTTCAACTCGTCGAG
                      ____________________________________________________________
consensus             CTCCAAAATCTTCCCGAACTGCGAGAACACGGCGTTTAGCGACTTCTTCAACTCGTCGAG
 
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JMSF012K03+           CTTGATTTTCTCGTTGAGATTGTTAATGTAAATTGTCATGTTTGCGGGAATCTCGCCGCT
                      ____________________________________________________________
consensus             CTTGATTTTCTCGTTGAGATTGTTAATGTAAATTGTCATGTTTGCGGGAATCTCGCCGCT
 
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JMSF012K03+           GGCTTGGTTCGCCTCCGCCATAACTGGATTGTTATTTGCTTTGCTGCTATCCCTTCCGTC
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consensus             GGCTTGGTTCGCCTCCGCCATAACTGGATTGTTATTTGCTTTGCTGCTATCCCTTCCGTC