Contig 006425:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011C07Sequence257006425 (2)ref|XP_007038578.1|6e-10ATP-dependent Clp protease ATP-binding subunit clpX [Theobroma cacao] gb|EOY230669006425 (2)ref|XP_011076243.1|244PREDICTED: uncharacterized protein LOC105160525 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF011C07-                                 AGGGGTATAATATTTATGTTTATGAAGTTCACTTTAA
                      ____________________________________________________________
consensus                                    AGGGGTATAATATTTATGTTTATGAAGTTCACTTTAA
 
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rJMSF011C07-          TTTGTAGTTAGATTGCAGGCTAGGGTATAGTACATAGGATGAAATTCCTAAAAATGTCTA
                      ____________________________________________________________
consensus             TTTGTAGTTAGATTGCAGGCTAGGGTATAGTACATAGGATGAAATTCCTAAAAATGTCTA
 
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rJMSF011C07-          GGTTGGGGACAATGAAATGGAAGCATTCAAATCAGCAAGACATTCACTTGGGAGGCTAAG
                      ____________________________________________________________
consensus             GGTTGGGGACAATGAAATGGAAGCATTCAAATCAGCAAGACATTCACTTGGGAGGCTAAG
 
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rJMSF011C07-          GAAAGAATTCAAGAAAACATCATCAATTGGTTGGACTGTTGCCACCCCAACCAGTCTGCA
                      ____________________________________________________________
consensus             GAAAGAATTCAAGAAAACATCATCAATTGGTTGGACTGTTGCCACCCCAACCAGTCTGCA
 
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rJMSF011C07-          ATTATTATTCTTCAGCCTCTCACCTCTTCCTTTCTTCATCTTTCCCTTCGATTCCTCCGA
                      ____________________________________________________________
consensus             ATTATTATTCTTCAGCCTCTCACCTCTTCCTTTCTTCATCTTTCCCTTCGATTCCTCCGA
 
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rJMSF011C07-          TGTAAGAACTGTTTCAACTACCAATGGCGGCGCTCTGTACACACTCCCGATTGAAAACCA
                      ____________________________________________________________
consensus             TGTAAGAACTGTTTCAACTACCAATGGCGGCGCTCTGTACACACTCCCGATTGAAAACCA
 
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rJMSF011C07-          GAACTTCGCCCGGAACTCAAGATCAATCTTGCCTGATTCTTGGTTGATGGTGCCTGTGAA
                      ____________________________________________________________
consensus             GAACTTCGCCCGGAACTCAAGATCAATCTTGCCTGATTCTTGGTTGATGGTGCCTGTGAA
 
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rJMSF011C07-          GAGCTCCGGTACGATGTCAATTTTCAACAGCGGCGGCAACGGCAGCCCCAAGAACTTGGT
                      ____________________________________________________________
consensus             GAGCTCCGGTACGATGTCAATTTTCAACAGCGGCGGCAACGGCAGCCCCAAGAACTTGGT
 
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rJMSF011C07-          GGTGGCGGTGGTCAACGGCGGAATGTACACGCTTTTCAACTCGAAATCAACTGAGATTTC
                      ____________________________________________________________
consensus             GGTGGCGGTGGTCAACGGCGGAATGTACACGCTTTTCAACTCGAAATCAACTGAGATTTC
 
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rJMSF011C07-          ATCGTCTTCTCCATTCTTTATGCCTTTTCCACTCCCCCTCCCACCTTCAGCATTGTACTC
JMSF011C07+                                                      CCTTCAGCATTGTACTC
                      ____________________________________________________________
consensus             ATCGTCTTCTCCATTCTTTATGCCTTTTCCACTCCCCCTCCCACCTTCAGCATTGTACTC
 
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rJMSF011C07-          GAAATCCGGGTATCTAGAAATCCCAAGCTTGCAGGCTCCCAGGGTCCTGAACTCAACGTC
JMSF011C07+           GAAATCCGGGTATCTAGAAATCCCAAGCTTGCAGGCTCCCAGGGTCCTGAACTCAACGTC
                      ____________________________________________________________
consensus             GAAATCCGGGTATCTAGAAATCCCAAGCTTGCAGGCTCCCAGGGTCCTGAACTCAACGTC
 
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rJMSF011C07-          GTACACCACATCATCGGCGGTCGGAACCGGAG                            
JMSF011C07+           GTACACCACATCATCGGCGGTCGGAACCGGAGATTCAGTGGCTGTCGTAGTTGAAGAAAT
                      ____________________________________________________________
consensus             GTACACCACATCATCGGCGGTCGGAACCGGAGATTCAGTGGCTGTCGTAGTTGAAGAAAT
 
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JMSF011C07+           TGGGTGGAATAATCTGCAGGTTTTCAATGGACGATGAAGTCTGGGAAGTGGAGATAGATA
                      ____________________________________________________________
consensus             TGGGTGGAATAATCTGCAGGTTTTCAATGGACGATGAAGTCTGGGAAGTGGAGATAGATA
 
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JMSF011C07+           GTAATTGGGTATATATTTTGGAAGCCTGCATGAGAGTTGGGGATTAGGGAAGTATGCTTC
                      ____________________________________________________________
consensus             GTAATTGGGTATATATTTTGGAAGCCTGCATGAGAGTTGGGGATTAGGGAAGTATGCTTC