Contig 006424:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011B11Sequence213006424 (2)724004698 (3)ref|XP_004235303.1|1e-77PREDICTED: transmembrane protein 120 homolog [Solanum lycopersicum]
JMSF029I08Sequence703006424 (2)ref|XP_004235303.1|8e-61PREDICTED: transmembrane protein 120 homolog [Solanum lycopersicum]775004698 (3)ref|XP_004235303.1|4e-97PREDICTED: transmembrane protein 120 homolog [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF029I08+                     CCTGTATAGAGGTAAAGCAACCATGCCTGGTAAAGTTGGACGGGCAATGC
                      ____________________________________________________________
consensus                       CCTGTATAGAGGTAAAGCAACCATGCCTGGTAAAGTTGGACGGGCAATGC
 
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JMSF029I08+           AGGTAGACATCCATCCCCAAATCCAAGACCTTAATCCAAGAAGCAGTGATGGGAATATAA
                      ____________________________________________________________
consensus             AGGTAGACATCCATCCCCAAATCCAAGACCTTAATCCAAGAAGCAGTGATGGGAATATAA
 
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JMSF029I08+           GGAAGAGATATGCTGTCCGATCTCTGAAACTATTGTATTCCTCTTTTACTTTCAACTGAA
                      ____________________________________________________________
consensus             GGAAGAGATATGCTGTCCGATCTCTGAAACTATTGTATTCCTCTTTTACTTTCAACTGAA
 
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JMSF029I08+           CATCCTTCCTATTAGCACGAACATTAACTGGACCCAGAAACATCCTCAAGAACTGCCCAT
                      ____________________________________________________________
consensus             CATCCTTCCTATTAGCACGAACATTAACTGGACCCAGAAACATCCTCAAGAACTGCCCAT
 
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JMSF029I08+           GAGATTTGCTTGGAAGATATGCTGCCGCATCTCCTTCGCTCAATATATACCTAGCTTTGA
                      ____________________________________________________________
consensus             GAGATTTGCTTGGAAGATATGCTGCCGCATCTCCTTCGCTCAATATATACCTAGCTTTGA
 
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JMSF029I08+           TTAATTCCTCTTCCCATTTTTCAGCTTGTATGGAATCCAACTTCCTAGATCGGATGGAGC
                      ____________________________________________________________
consensus             TTAATTCCTCTTCCCATTTTTCAGCTTGTATGGAATCCAACTTCCTAGATCGGATGGAGC
 
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JMSF029I08+           TACGAAGGCTTTGGATGTGAGCATCGAGGGCGGCGGCTCGCTTGCGGAGCGACTCTTCAT
                      ____________________________________________________________
consensus             TACGAAGGCTTTGGATGTGAGCATCGAGGGCGGCGGCTCGCTTGCGGAGCGACTCTTCAT
 
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JMSF029I08+           CGCGAGCAGTGCGGGAGATCAGGGCGCCAGCAGCGTCCTGCAACTCCTTAGCTTGCTCCA
                      ____________________________________________________________
consensus             CGCGAGCAGTGCGGGAGATCAGGGCGCCAGCAGCGTCCTGCAACTCCTTAGCTTGCTCCA
 
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JMSF029I08+           CCAGCCTAGGAACCTCCTCCGCGTAGTTCAAATCCTCCGCCGTGGAGTCGCCCATCGGAT
                      ____________________________________________________________
consensus             CCAGCCTAGGAACCTCCTCCGCGTAGTTCAAATCCTCCGCCGTGGAGTCGCCCATCGGAT
 
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JMSF029I08+           CGCCGATTCAATTCCCCAATCCGACCTCCCCCAAATTCTATAAGATTAAAAACGCGTATA
JMSF011B11+                                      CCCCCAAATTCTATAAGATTAAAAACGCGTATA
                      ____________________________________________________________
consensus             CGCCGATTCAATTCCCCAATCCGACCTCCCCCAAATTCTATAAGATTAAAAACGCGTATA
 
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JMSF029I08+           ATTGTATAAATATGTTTCTATCTATGTTTATATGTATTCAATTCGTAGTATCGTTGTGCA
JMSF011B11+           ATTGTATAAATATGTTTCTATCTATGTTTATATGTATTCAATTCGTAGTATCGTTGTGCA
                      ____________________________________________________________
consensus             ATTGTATAAATATGTTTCTATCTATGTTTATATGTATTCAATTCGTAGTATCGTTGTGCA
 
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JMSF029I08+           AACGCAGTTGCGAATAAATGGAAGGAATATTTTCCGACGGAGTCCGGGAAGC        
JMSF011B11+           AACGCAGTTGCGAATAAATGGAAGGAATATTTTCCGACGGAGTCCGGGAAGCGGTGGAGA
                      ____________________________________________________________
consensus             AACGCAGTTGCGAATAAATGGAAGGAATATTTTCCGACGGAGTCCGGGAAGCGGTGGAGA
 
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JMSF011B11+           GTGAAGCAGAATCAGAAGGTGTTATAGAGAGCGATGAAGAAATGGGGCCAGCGACGCAGC
                      ____________________________________________________________
consensus             GTGAAGCAGAATCAGAAGGTGTTATAGAGAGCGATGAAGAAATGGGGCCAGCGACGCAGC