Contig 006420:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010H08Sequence359006420 (2)ref|XP_002313297.2|1e-46hypothetical protein POPTR_0009s06740g [Populus trichocarpa] gb|EEE87252.2| hypo760022468ref|XP_002272479.1|1e-87PREDICTED: probable mannitol dehydrogenase [Vitis vinifera] emb|CBI33198.3| unna
JMSF051G07Sequence504006420 (2)gb|AEO99200.1|5e-54Cr2141 [Catharanthus roseus]

Alignment

This contig is upended


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JMSF051G07+                   CGTAGTGTTCATTACAGACCATTTCGTNAGAGTAGCCCCCGTACGTTATGGT
                      ____________________________________________________________
consensus                     CGTAGTGTTCATTACAGACCATTTCGTNAGAGTAGCCCCCGTACGTTATGGT
 
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JMSF051G07+           TCCATNGTGGTTGACGAAACTGTAAGTNTGGATCATTTTGGGACAGTAATTNTCGAGCTC
                      ____________________________________________________________
consensus             TCCATNGTGGTTGACGAAACTGTAAGTNTGGATCATTTTGGGACAGTAATTNTCGAGCTC
 
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JMSF051G07+           GGTTGAACAAAGGTTGCAGGAGCCGCAGGAACCAACCAGGCACCCCACGCCTACTTNGTC
                      ____________________________________________________________
consensus             GGTTGAACAAAGGTTGCAGGAGCCGCAGGAACCAACCAGGCACCCCACGCCTACTTNGTC
 
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JMSF051G07+           TCCGACCTTGAATTTNTTCACCTTGCTACCCACNTCTGTTANTTCACCCACAATCTCATG
JMSF010H08+           TCCGACCTTGAATTTCTTCACCTTGCTACCCACCTCTGTTACTTCACCCACAATCTCATG
                      ____________________________________________________________
consensus             TCCGACCTTGAATTTCTTCACCTTGCTACCCACCTCTGTTACTTCACCCACAATCTCATG
 
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JMSF051G07+           CCCGGGTACAATTGGATAAGTAGACATGCCGAAATCATTCTTGGCAAAGTGGAGATCGGT
JMSF010H08+           CCCGGGTACAATTGGATAAGTAGACATGCCGAAATCATTCTTGGCAAAGTGGAGATCGGT
                      ____________________________________________________________
consensus             CCCGGGTACAATTGGATAAGTAGACATGCCGAAATCATTCTTGGCAAAGTGGAGATCGGT
 
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JMSF051G07+           ATGACAGATCCCGCAGTACAGCACCTTAAATCTCACATCATCTTCTCCAGTTGCCCTTCT
JMSF010H08+           ATGACAGATCCCGCAGTACAGCACCTTAAATCTCACATCATCTTCTCCAGTTGCCCTTCT
                      ____________________________________________________________
consensus             ATGACAGATCCCGCAGTACAGCACCTTAAATCTCACATCATCTTCTCCAGTTGCCCTTCT
 
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JMSF051G07+           GGAGAATTTGAAAGGGGAGAGGACACCAGAAGTGTCTCTGGCAGCCCATCCGTATGTCTT
JMSF010H08+           GGAGAATTTGAAAGGGGAGAGGACACCAGAAGTGTCTCTGGCAGCCCATCCGTATGTCTT
                      ____________________________________________________________
consensus             GGAGAATTTGAAAGGGGAGAGGACACCAGAAGTGTCTCTGGCAGCCCATCCGTATGTCTT
 
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JMSF051G07+           CACTGGGTGTTCATTTTCGTAGGATTCCGAGCCCAT--TATTTCGCTTNGTGATATCAAA
JMSF010H08+           CACTGGGTGTTCATTTTCGTAGGATTCCGAGCCCATTATATTTCGCTTTGTGATATCAAA
                      ____________________________________________________________
consensus             CACTGGGTGTTCATTTTCGTAGGATTCCGAGCCCATTATATTTCGCTTTGTGATATCAAA
 
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JMSF051G07+           GCTNGGGAGATTGCAAAATTTATTTTGGAAAGAT                          
JMSF010H08+           -CTTGGGAGATTGCAAAATTTATTTTGGAAAGATTTAGGAAATATTGGATTATATTGTCC
                      ____________________________________________________________
consensus             GCTTGGGAGATTGCAAAATTTATTTTGGAAAGATTTAGGAAATATTGGATTATATTGTCC