Contig 006416:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041H05Sequence647006416 (3)ref|XP_006341784.1|2e-97PREDICTED: T-complex protein 1 subunit epsilon-like [Solanum tuberosum]600006922 (3)ref|XP_006341784.1|4e-91PREDICTED: T-complex protein 1 subunit epsilon-like [Solanum tuberosum]
JMSF010B02Sequence286006416 (3)ref|XP_009627401.1|67.0PREDICTED: uncharacterized protein LOC104117952, partial [Nicotiana tomentosifo736006922 (3)ref|XP_004239159.1|6e-133PREDICTED: T-complex protein 1 subunit epsilon [Solanum lycopersicum]
JMSF023O13Sequence696006416 (3)ref|XP_006341784.1|1e-108PREDICTED: T-complex protein 1 subunit epsilon-like [Solanum tuberosum]741006922 (3)ref|XP_010248739.1|3e-130PREDICTED: T-complex protein 1 subunit epsilon [Nelumbo nucifera]

Alignment

This contig is upended


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JMSF023O13+                                  ATCTTAGATGACAAAGTAGTCATGCATGTTTGAACTA
                      ____________________________________________________________
consensus                                    ATCTTAGATGACAAAGTAGTCATGCATGTTTGAACTA
 
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JMFF041H05+                        ATTCACACCAAATTCAAATTTATGTGCTATGTGTTCGAGATGCTCAA
JMSF023O13+           AAGGCTCAAAATTATTCACACCAAATTCAAATTTATGTGCTATGTGTTCGAGATGCTCAA
                      ____________________________________________________________
consensus             AAGGCTCAAAATTATTCACACCAAATTCAAATTTATGTGCTATGTGTTCGAGATGCTCAA
 
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JMFF041H05+           CTGCAATCCTTGATGCCATTTCATAACCCTCAGCAATACGAATAGGATGAATGCCACGTT
JMSF023O13+           CTGCAATCCTTGATGCCATTTCATAACCCTCAGCAATACGAATAGGATGAATGCCACGTT
                      ____________________________________________________________
consensus             CTGCAATCCTTGATGCCATTTCATAACCCTCAGCAATACGAATAGGATGAATGCCACGTT
 
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JMFF041H05+           CCAACAACTTTTCGGCTTGTTCAAGAAGTGCCCCTGCCATGACAACAACTCCAGTTGTTC
JMSF023O13+           CCAACAACTTTTCGGCTTGTTCAAGAAGTGCCCCTGCCATGACAACAACTCCAGTTGTTC
                      ____________________________________________________________
consensus             CCAACAACTTTTCGGCTTGTTCAAGAAGTGCCCCTGCCATGACAACAACTCCAGTTGTTC
 
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JMFF041H05+           CATCACCAATCTCATAGTCCTGACTCCGTGACAATTCTACCATTAGCTTTGCGATCTGGT
JMSF023O13+           CATCACCAATCTCATAGTCCTGACTCCGTGACAATTCTACCATTAGCTTTGCGATCTGGT
                      ____________________________________________________________
consensus             CATCACCAATCTCATAGTCCTGACTCCGTGACAATTCTACCATTAGCTTTGCGATCTGGT
 
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JMFF041H05+           TGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGAGATGATAACGTCTCCGT
JMSF023O13+           TGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGAGATGATAACGTCTCCGT
                      ____________________________________________________________
consensus             TGTCAACATCCATCTGCTCCAAGATGGTTGCACCATCATTTGAGATGATAACGTCTCCGT
 
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JMFF041H05+           CGGGGCTCTGGAGCATCTTGTCCATGCCTTTGGGACCGAGTGAGGTCCGGAGGATCCGAG
JMSF023O13+           CGGGGCTCTGGAGCATCTTGTCCATGCCTTTGGGACCGAGTGAGGTCCGGAGGATCCGAG
                      ____________________________________________________________
consensus             CGGGGCTCTGGAGCATCTTGTCCATGCCTTTGGGACCGAGTGAGGTCCGGAGGATCCGAG
 
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JMFF041H05+           CGACGGCCTTGCCGGCGGAAATGTTGGCCTTCTGAGCATCGAGGCCACGCAGCCTCGACT
JMSF023O13+           CGACGGCCTTGCCGGCGGAAATGTTGGCCTTCTGAGCATCGAGGCCACGCAGCCTCGACT
JMSF010B02+                         GCGGAAATGTTGGCCTTCTGAGCATCGAGGCCACGCAGCCTCGACT
                      ____________________________________________________________
consensus             CGACGGCCTTGCCGGCGGAAATGTTGGCCTTCTGAGCATCGAGGCCACGCAGCCTCGACT
 
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JMFF041H05+           TCTGTTCCTGTTCCTTCAGTATTATAAAGGGCCTCCCGTATTCATCCATCACCAACGCCA
JMSF023O13+           TCTGTTCCTGTTCCTTCAGTATTATAAAGGGCCTCCCGTATTCATCCATCACCAACGCCA
JMSF010B02+           TCTGTTCCTGTTCCTTCAGTATTATAAAGGGCCTCCCGTATTCATCCATCACCAACGCCA
                      ____________________________________________________________
consensus             TCTGTTCCTGTTCCTTCAGTATTATAAAGGGCCTCCCGTATTCATCCATCACCAACGCCA
 
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JMFF041H05+           TTGCTGCTTCTTTCTGATCGGATCTTGAGCAGATTGGAAACGAACTCTTACTCAGCTGTA
JMSF023O13+           TTGCTGCTTCTTTCTGATCGGATCTTGAGCAGATTGGAAACGAACTCTTACTCAGCTGTA
JMSF010B02+           TTGCTGCTTCTTTCTGATCGGATCTTGAGCAGATTGGAAACGAACTCTTACTCAGCTGTA
                      ____________________________________________________________
consensus             TTGCTGCTTCTTTCTGATCGGATCTTGAGCAGATTGGAAACGAACTCTTACTCAGCTGTA
 
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JMFF041H05+           GATAGAAGAAGAGTACAGACTGTGAGAAGTGAGATGAAGAAGAGATTGTGAATCTCTTTC
JMSF023O13+           GATAGAAGAAGAGTACAGACTGTGAGAAGTGAGATGAAGAAGAGATTGTGAATCTCTTTC
JMSF010B02+           GATAGAAGAAGAGTACAGACTGTGAGAAGTGAGATGAAGAAGAGATTGTGAATCTCTTTC
                      ____________________________________________________________
consensus             GATAGAAGAAGAGTACAGACTGTGAGAAGTGAGATGAAGAAGAGATTGTGAATCTCTTTC
 
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JMFF041H05+           GTCTAGAAACTTTCACAAGTCGGTTTTTGTTTTGCCCTAGCTAGCTTGAGCTTCCCT   
JMSF023O13+           GTCTAGAAACTTTCACAAGTCGGTTTTTGTTTTGCCCTAGCTAGCTTGAGCTTCCCT   
JMSF010B02+           GTCTAGAAACTTTCACAAGTCGGTTTTTGTTTTGCCCTAGCTAGCTTGAGCTTCCCTCCC
                      ____________________________________________________________
consensus             GTCTAGAAACTTTCACAAGTCGGTTTTTGTTTTGCCCTAGCTAGCTTGAGCTTCCCTCCC