Contig 006415:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS025H02Sequence630006415 (6)ref|XP_009787474.1|6e-93PREDICTED: flowering time control protein FPA isoform X1 [Nicotiana sylvestris]
JMFS101H06Sequence612006415 (6)ref|XP_009787476.1|2e-51PREDICTED: flowering time control protein FPA isoform X2 [Nicotiana sylvestris]
JMFS105D01Sequence625006415 (6)ref|XP_009787476.1|7e-43PREDICTED: flowering time control protein FPA isoform X2 [Nicotiana sylvestris]
JMFS159G08Sequence482006415 (6)ref|XP_009787476.1|1e-63PREDICTED: flowering time control protein FPA isoform X2 [Nicotiana sylvestris]
JMSF007E17Sequence422006415 (6)ref|XP_009787474.1|1e-16PREDICTED: flowering time control protein FPA isoform X1 [Nicotiana sylvestris]731012520 (2)
JMSF009P05Sequence294006415 (6)715012520 (2)

Alignment

This contig is upended


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JMFS025H02+                                         ACCCAGCATGTGTAGGCTCAGAGTAAGCTG
                      ____________________________________________________________
consensus                                           ACCCAGCATGTGTAGGCTCAGAGTAAGCTG
 
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JMFS025H02+           TCACATAATCTTGTGTATGCAAAGGATTCCTATAAGGAAATTGTCCCTCCCTTGCAAAGT
                      ____________________________________________________________
consensus             TCACATAATCTTGTGTATGCAAAGGATTCCTATAAGGAAATTGTCCCTCCCTTGCAAAGT
 
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JMFS025H02+           CAGGACCTTGCTCCCTTCTTGCAGGATGTGACCTGAGATAATCCACACGAATCTGGTCTC
                      ____________________________________________________________
consensus             CAGGACCTTGCTCCCTTCTTGCAGGATGTGACCTGAGATAATCCACACGAATCTGGTCTC
 
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JMFS025H02+           CACTGATCAGCTTCCCATTCATAGTTTTAAGTGCTTCTGTTGCATCTTCCAAACGAGCAT
JMFS159G08+                                 AGTTTTAAGTGCTTCTGTTGCATCTTCCAAACGAGCAT
                      ____________________________________________________________
consensus             CACTGATCAGCTTCCCATTCATAGTTTTAAGTGCTTCTGTTGCATCTTCCAAACGAGCAT
 
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JMFS025H02+           AGTCAATATAAGCTGTGCTCCGATCCTTTATGAATTTGAATTCTAGGATTTTGCCAAATT
JMFS159G08+           AGTCAATATAAGCTGTGCTCCGATCCTTTATGAATTTGAATTCTAGGATTTTGCCAAATT
JMFS105D01+                                  TCCTTTATGAATNTGAATTCTAGGATTNTGCCAAATN
                      ____________________________________________________________
consensus             AGTCAATATAAGCTGTGCTCCGATCCTTTATGAATTTGAATTCTAGGATTTTGCCAAATT
 
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JMFS025H02+           TCTTAAAATGTTCCTCTAATTCTTCTTTAGAAACAGACTGGCCTATCCCAGCCACCCACA
JMFS159G08+           TCTTAAAATGTTCCTCTAATTCTTCTTTAGAAACAGACTGGCCTATCCCAGCCACCCACA
JMFS101H06+                                     TTAGAAACAGACTGGCCTATCCCAGCCACCCACA
JMFS105D01+           TCTTANAATGTTCCTCTAAT--CTTCTTAGAAACAGACTGGCCTATCCCAGCCACCCACA
                      ____________________________________________________________
consensus             TCTTAAAATGTTCCTCTAATTCTTCTTTAGAAACAGACTGGCCTATCCCAGCCACCCACA
 
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JMFS025H02+           GACTTTTGCACGGCTTAGCCGGTTTCGCGAATTCAATCTTAAGAGGATTCCCGCGAAGCA
JMFS159G08+           GACTTTTGCACGGCTTAGCCGGTTTCGCGAATTCAATCTTAAGAGGATTCCCGCGAAGCA
JMFS101H06+           GACTTTTGCACGGCTTAGCCGGTTTCGCGAATTCAATCTTAAGAGGATTCCCGCGAAGCA
JMFS105D01+           GACTTTTGCACGGCTTAGCCGGTTTCGCGAATTCAATCTTAAGAGGATTCCCGCGAAGCA
                      ____________________________________________________________
consensus             GACTTTTGCACGGCTTAGCCGGTTTCGCGAATTCAATCTTAAGAGGATTCCCGCGAAGCA
 
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JMFS025H02+           CGGTTCCCTGGAGCGCGTCCTTGGCGGCCTTGGCATCTTCTAGGCTTCTGAAGTAGAGGA
JMFS159G08+           CGGTTCCCTGGAGCGCGTCCTTGGCGGCCTTGGCATCTTCTAGGCTTCTGAAGTAGAGGA
JMFS101H06+           CGGTTCCCTGGAGCGCGTCCTTGGCGGCCTTGGCATCTTCTAGGCTTCTGAAGTAGAGGA
JMSF007E17+                                                          CTGAAGTAGAGGA
JMFS105D01+           CGGTTCCCTGGAGCGCGTCCTTGGCGGCCTTGGCATCTTCTAGGCTTCTGAAGTAGAGGA
                      ____________________________________________________________
consensus             CGGTTCCCTGGAGCGCGTCCTTGGCGGCCTTGGCATCTTCTAGGCTTCTGAAGTAGAGGA
 
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JMFS025H02+           AGGCGTAGCTGCGGGCGGAGTAGGAGGTTATGCTGTCGACCTGGCCATACTTCTCGAACA
JMFS159G08+           AGGCGTACCTCCGGGCGGAGTAGGAGGTTATGCTGTCGACCTGGCCATACTTCTCGAACA
JMFS101H06+           AGGCGTAGCTGCGGGCGGAGTAGGAGGTTATGCTGTCGACCTGGCCATACTTCTCGAACA
JMSF007E17+           AGGCGTAGCTGCGGGCGGAGTAGGAGGTTATGCTGTCGACCTGGCCATACTTCTCGAACA
JMFS105D01+           AGGCGTAGCTGCGGGCGGAGTAGGAGGTTATGCTGTCGACCTGGCCATACTTCTCGAACA
                      ____________________________________________________________
consensus             AGGCGTAGCTGCGGGCGGAGTAGGAGGTTATGCTGTCGACCTGGCCATACTTCTCGAACA
 
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JMFS025H02+           GAGCGGTAAGCTCGGCTTCGGTGACATCGGGGGTCAGATTACCAACCCACAGGTTATTCG
JMFS159G08+           GAGCGGTAAGCTCGGCTTCGGTGACATCGGGGGTCAGATTACCAACCCACAGGTTATTCG
JMFS101H06+           GAGCGGTAAGCTCGGCTTCGGTGACATCGGGGGTCAGATTACCAACCCACAGGTTATTCG
JMSF007E17+           GAGCGGTAAGCTCGGCTTCGGTGACATCGGGGGTCAGATTACCAACCCACAGGTTATTCG
JMFS105D01+           GAGCGGTAAGCTCGGCTTCGGTGACATCGGGGGTCAGATTACCAACCCACAGGTTATTCG
                      ____________________________________________________________
consensus             GAGCGGTAAGCTCGGCTTCGGTGACATCGGGGGTCAGATTACCAACCCACAGGTTATTCG
 
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JMFS025H02+           TCGCCGTATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
JMFS159G08+           TCGCCGTATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
JMFS101H06+           TCGCCGTATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
JMSF007E17+           TCGCCGTATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
JMFS105D01+           TCGCCGTATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
JMSF009P05+                 TATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
                      ____________________________________________________________
consensus             TCGCCGTATCGGACTCCGGTTTCGCCGAGGATCTGAACGGCGGCACCATGGTAGAAACCC
 
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JMFS159G08+           TAGACTGCATAAACGGTTGCTCCG                                    
JMFS101H06+           TAGACTGCATAAACGGTTGCTCCGTATTTGGTTGCACCAAAAAAAAATTAAAGAAATGGA
JMSF007E17+           TAGACTGCATAAACGGTTGCTCCGTATTTGGTTGCACCAAAAAAAAATTAAAGAAATGGA
JMFS105D01+           TAGACTGCATAAACGGTTGCTCCGTATTTGGTTGCACCAAAAAAAAATTAAAGAAATGGA
JMSF009P05+           TAGACTGCATAAACGGTTGCTCCGTATTTGGTTGCACCAAAAAAAAATTAAAGAAATGGA
                      ____________________________________________________________
consensus             TAGACTGCATAAACGGTTGCTCCGTATTTGGTTGCACCAAAAAAAAATTAAAGAAATGGA
 
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JMFS101H06+           ACGGAGAATGCGAGAGGTGGAGATAAACAACAAATCTGTGGGCGTCTGTCGTCTACAAGT
JMSF007E17+           ACGGAGAATGCGAGAGGTGGAGATAAACAACAAATCTGTGGGCGTCTGTCGTCTACAAGT
JMFS105D01+           ACGGAGAATGCGAGAGGTGGAGATAAACAACAAATCTGTGGGCGTCTGTCGTCTACAAGT
JMSF009P05+           ACGGAGAATGCGAGAGGTGGAGATAAACAACAAATCTGTGGGCGTCTGTCGTCTACAAGT
                      ____________________________________________________________
consensus             ACGGAGAATGCGAGAGGTGGAGATAAACAACAAATCTGTGGGCGTCTGTCGTCTACAAGT
 
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JMFS101H06+           TATTATACGTATAAGATGGAGAGAGGGAGTGCGGCGACGTCGGAGTGTTTGCGAGAAACG
JMSF007E17+           TATTATACGTATAAGATGGAGAGAGGGAGTGCGGCGACGTCGGAGTGTTTGCGAGAAACG
JMFS105D01+           TATTATACGTATAAGATGGAGAGAGGGAGTGCGGCGACGTCGGAGTGTTTGCGAGAAACG
JMSF009P05+           TATTATACGTATAAGATGGAGAGAGGGAGTGCGGCGACGTCGGAGTGTTTGCGAGAAACG
                      ____________________________________________________________
consensus             TATTATACGTATAAGATGGAGAGAGGGAGTGCGGCGACGTCGGAGTGTTTGCGAGAAACG
 
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JMFS101H06+           GATGAGAGAGGGAATCAAAAACCGGGAGAACGCCTCGCTAAGGAACG             
JMSF007E17+           GATGAGAGAGGGAATCAAAAACCGGGAGAACGCCTCGCTAAGGAACG             
JMFS105D01+           GATGAGAGAGGGAATCAAAAACCGGGAGAACGCCTCGCTAAGGAACG             
JMSF009P05+           GATGAGAGAGGGAATCAAAAACCGGGAGAACGCCTCGCTAAGGAACGTAAATCCCAAACC
                      ____________________________________________________________
consensus             GATGAGAGAGGGAATCAAAAACCGGGAGAACGCCTCGCTAAGGAACGTAAATCCCAAACC