Contig 006413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009H23Sequence272006413 (3)ref|XP_009786415.1|2e-06PREDICTED: E3 ubiquitin-protein ligase Hakai [Nicotiana sylvestris] ref|XP_00978774002876 (2)ref|XP_009786415.1|1e-54PREDICTED: E3 ubiquitin-protein ligase Hakai [Nicotiana sylvestris] ref|XP_00978
JMSF015E16Sequence492006413 (3)ref|XP_009589078.1|1e-58PREDICTED: E3 ubiquitin-protein ligase Hakai [Nicotiana tomentosiformis]
JMSF027E12Sequence635006413 (3)ref|XP_009786415.1|8e-91PREDICTED: E3 ubiquitin-protein ligase Hakai [Nicotiana sylvestris] ref|XP_00978788002876 (2)ref|XP_009786415.1|1e-50PREDICTED: E3 ubiquitin-protein ligase Hakai [Nicotiana sylvestris] ref|XP_00978

Alignment

This contig is upended


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JMSF027E12+                       TTTTTCTGCATTTGGATGGAGGAGGTCAGCATGGTTTCCATGAATATG
                      ____________________________________________________________
consensus                         TTTTTCTGCATTTGGATGGAGGAGGTCAGCATGGTTTCCATGAATATG
 
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JMSF027E12+           AGCCTCAAACTCATTCTTCTTTATGAACGACTTAAGACAGTGAGGAGCTGCACAGATGAA
                      ____________________________________________________________
consensus             AGCCTCAAACTCATTCTTCTTTATGAACGACTTAAGACAGTGAGGAGCTGCACAGATGAA
 
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JMSF015E16+                                              GAATGCGTTCATCACAGAGGTAGCA
JMSF027E12+           AATCCCTTCCATCAATTTTATTGTCTGTATCTTCTGAATGCGTTCATCACAGAGGTAGCA
                      ____________________________________________________________
consensus             AATCCCTTCCATCAATTTTATTGTCTGTATCTTCTGAATGCGTTCATCACAGAGGTAGCA
 
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JMSF015E16+           GAGAGAATCACTCCTTGCACAATCCAAACAGAATGCATGCTCACATGGGCTCAGACGCCC
JMSF027E12+           GAGAGAATCACTCCTTGCACAATCCAAACAGAATGCATGCTCACATGGGCTCAGACGCCC
                      ____________________________________________________________
consensus             GAGAGAATCACTCCTTGCACAATCCAAACAGAATGCATGCTCACATGGGCTCAGACGCCC
 
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JMSF015E16+           ATAAATAGCAATAGGGAAATCGCAACGAACACAAAAATGCACTCGCTCCCCAAGCTGACG
JMSF027E12+           ATAAATAGCAATAGGGAAATCGCAACGAACACAAAAATGCACTCGCTCCCCAAGCTGACG
                      ____________________________________________________________
consensus             ATAAATAGCAATAGGGAAATCGCAACGAACACAAAAATGCACTCGCTCCCCAAGCTGACG
 
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JMSF015E16+           ACGGGATTTGCGGCCAACAGCTTTTGAAATGGATGCAGTACTTGCCAAACCAAGGCTCTT
JMSF027E12+           ACGGGATTTGCGGCCAACAGCTTTTGAAATGGATGCAGTACTTGCCAAACCAAGGCTCTT
                      ____________________________________________________________
consensus             ACGGGATTTGCGGCCAACAGCTTTTGAAATGGATGCAGTACTTGCCAAACCAAGGCTCTT
 
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JMSF015E16+           AGCTACAGGAAGATCAGCTAAGACAAGGTGATCAGGGCATGCAACAGTAATGCTATCTAC
JMSF027E12+           AGCTACAGGAAGATCAGCTAAGACAAGGTGATCAGGGCATGCAACAGTAATGCTATCTAC
JMSF009H23+                                     GGTGATCAGGGCATGCAACAGTAATGCTATCTAC
                      ____________________________________________________________
consensus             AGCTACAGGAAGATCAGCTAAGACAAGGTGATCAGGGCATGCAACAGTAATGCTATCTAC
 
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JMSF015E16+           GGGTAAGGGCTTTGCAGGACCCCCACTTTCACTGGATGGCTTTCTGAGCTTAATCTGAAG
JMSF027E12+           GGGTAAGGGCTTTGCAGGACCCCCACTTTCACTGGATGGCTTTCTGAGCTTAATCTGAAG
JMSF009H23+           GGGTAAGGGCTTTGCAGGACCCCCACTTTCACTGGATGGCTTTCTGAGCTTAATCTGAAG
                      ____________________________________________________________
consensus             GGGTAAGGGCTTTGCAGGACCCCCACTTTCACTGGATGGCTTTCTGAGCTTAATCTGAAG
 
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JMSF015E16+           CATCTCTTCCAATATTTCTTTCCTCCCTAAACAACCAATCTGAGTCCTTCAACTTAAATA
JMSF027E12+           CATCTCTTCCAATATTTCTTTCCTCCCTAAACAACCAATCTGAGTTCTTCAACTTAAATA
JMSF009H23+           CATCTCTTCCAATATTTCTTTCCTCCCTAAACAACCAATCTGAGTTCTTCAACTTAAATA
                      ____________________________________________________________
consensus             CATCTCTTCCAATATTTCTTTCCTCCCTAAACAACCAATCTGAGTTCTTCAACTTAAATA
 
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JMSF015E16+           ATGTTTTTCAAAAAATTCTCAGCTAGCCGTCCGACCGTCGTCACTCCACCGCTGTTCTGC
JMSF027E12+           ATGTTTTTCAAAAAATTCTCAGCTAGCCGTCCGACCGTCGTCACTCCACCGCTGTTCTGC
JMSF009H23+           ATGTTTTTCAAAAAATTCTCAGCTAGCCGTCCGACCGTCGTCACTCCACCGCTGTTCTGC
                      ____________________________________________________________
consensus             ATGTTTTTCAAAAAATTCTCAGCTAGCCGTCCGACCGTCGTCACTCCACCGCTGTTCTGC
 
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JMSF015E16+           AGTCCGCCATCTCCATAAAACTACAGCAACGTCGCAAGAAAACG                
JMSF027E12+           AGTCCGCCATCTCCATAAAACTACAGCAACGTCGCAAGAAAACG                
JMSF009H23+           AGTCCGCCAT--CCATAAAACTACAGCAACGTCGCAAGAAAACGTCAATTGTGAAAATTC
                      ____________________________________________________________
consensus             AGTCCGCCATCTCCATAAAACTACAGCAACGTCGCAAGAAAACGTCAATTGTGAAAATTC