| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028B14 | Sequence | 530 | 006411 (10) | ref|XP_009771080.1| | 1e-34 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
| JMFS052F12 | Sequence | 639 | 006411 (10) | ref|XP_009771080.1| | 7e-30 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
| JMFS086C09 | Sequence | 619 | 006411 (10) | ref|XP_009771080.1| | 2e-30 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
| JMFS107H04 | Sequence | 627 | 006411 (10) | ref|XP_009771080.1| | 4e-43 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
| JMFS134C05 | Sequence | 616 | 006411 (10) | ref|XP_009771080.1| | 6e-30 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
| JMFS147B01 | Sequence | 626 | 006411 (10) | ref|XP_009771080.1| | 5e-36 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
| JMFS158D01 | Sequence | 485 | 006411 (10) | ref|XP_004238139.1| | 3e-22 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 isoform X1 [Solanum lycope | |||||
| JMSF009C09 | Sequence | 242 | 006411 (10) | 720 | 009653 (3) | gb|AHW48349.1| | 4e-88 | C3HC4-type RING finger protein [Nicotiana benthamiana] | |||
| JMSF020J03 | Sequence | 277 | 006411 (10) | ||||||||
| JMSF052A05 | Sequence | 648 | 006411 (10) | ref|XP_009771080.1| | 8e-44 | PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Nicotiana sylvestris] ref | |||||
This contig is upended
. : . : . : . : . : . :
JMSF052A05+ CTCGTCATC
____________________________________________________________
consensus CTCGTCATC
. : . : . : . : . : . :
JMSF052A05+ ATCGGTATCATCCTCCTCCATTCCCGAACTTCTGTTTAGGTCACGAGGCAAAGTGCCCGA
JMFS107H04+ CCTCCATTCCCGAACTTCTGTNTAGGTCACGAGGCAAAGTGCCCGA
____________________________________________________________
consensus ATCGGTATCATCCTCCTCCATTCCCGAACTTCTGTTTAGGTCACGAGGCAAAGTGCCCGA
. : . : . : . : . : . :
JMSF052A05+ ACTAGACCCTTGCATAGGCAAAACCCTGCTACCTAGATTTACGTCAACATTATTCAACGA
JMFS134C05+ GCTACCTAGATTTACGTCAACATTATTCAACGA
JMFS147B01+ TGCATAGGCAAAACCCTGCTACCTAGATTTACGTCAACATTATTCAACGA
JMFF028B14+ TTACGTCAACATTATTCAACGA
JMFS107H04+ ACTAGACCCTTGCATAGGCAAAACCCTGCTACCTAGATTTACGTCAACATTATTCAACGA
____________________________________________________________
consensus ACTAGACCCTTGCATAGGCAAAACCCTGCTACCTAGATTTACGTCAACATTATTCAACGA
. : . : . : . : . : . :
JMSF052A05+ AAGAATATTGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
JMFS134C05+ AAGAATA-TGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
JMFS147B01+ AAGAATATTGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
JMFS052F12+ TGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
JMFF028B14+ AAGAATATTGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
JMFS107H04+ AAGAATATTGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
JMFS086C09+ ATTGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
____________________________________________________________
consensus AAGAATATTGGAAGGCTCAAACCGCCTTTCCTCGGGGACACAAGACGGCCCGGGGCAAGC
. : . : . : . : . : . :
JMSF052A05+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
JMFS134C05+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
JMFS147B01+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
JMFS052F12+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
JMFF028B14+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
JMFS107H04+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
JMFS086C09+ ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
____________________________________________________________
consensus ACTCATCGAAGATGGCCAATTGTGTCCCGTTTTCGGCTCATTTTCACTCACCTGACTTTG
. : . : . : . : . : . :
JMSF052A05+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFS134C05+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFS147B01+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFS052F12+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFF028B14+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFS158D01+ TCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFS107H04+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
JMFS086C09+ TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
____________________________________________________________
consensus TGCAACACTCGAGCTACTCTCTCCTATGGTCCACCCAATCATCGTCTGCCTCTCTTGACC
. : . : . : . : . : . :
JMSF052A05+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFS134C05+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFS147B01+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFS052F12+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFF028B14+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFS158D01+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFS107H04+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
JMFS086C09+ CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
____________________________________________________________
consensus CGTAGGAGTAATATACGCAACACTCGCATCGTTAGGAGATACAATGTAATCTGGCAACCG
. : . : . : . : . : . :
JMSF052A05+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFS134C05+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFS147B01+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFS052F12+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFF028B14+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFS158D01+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFS107H04+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
JMFS086C09+ ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
____________________________________________________________
consensus ATTTTGAGAAGGACTCCTCAAATTATTCCAGCATACCGGTTGATCTAAACCATCACCACT
. : . : . : . : . : . :
JMSF052A05+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFS134C05+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFS147B01+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFS052F12+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFF028B14+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFS158D01+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFS107H04+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMFS086C09+ CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
JMSF009C09+ CCC
____________________________________________________________
consensus CGAAGGGCCACGAGTAAAGTCTAGAGTCTCCGGTAACGAACCAATTGCACTCCTTTGCCC
. : . : . : . : . : . :
JMSF052A05+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFS134C05+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFS147B01+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFS052F12+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFF028B14+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFS158D01+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFS107H04+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMFS086C09+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
JMSF009C09+ TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
____________________________________________________________
consensus TTGCATTAGGGCTCGTCGTATTTTATCTCGAACAAATCCCACCGAATATCACACTGCAAG
. : . : . : . : . : . :
JMSF052A05+ CCAAATGCCTAGCCCCGACC
JMFS134C05+ CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
JMFS147B01+ CCAAATGCCTAGCCCCGACC
JMFS052F12+ CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
JMFF028B14+ CCAAATGCCTAGCCCCG-------------------------------------------
JMFS158D01+ CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
JMFS107H04+ CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
JMFS086C09+ CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
JMSF009C09+ CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
____________________________________________________________
consensus CCAAATGCCTAGCCCCGACCAGCGAAGTAGCTACAGATTAAACAACAGATCTAACATCAA
. : . : . : . : . : . :
JMFS134C05+ AACC
JMFS052F12+ AACC
JMFF028B14+ -ACCGCTTAACAGAAGGGAAAGAGAGAAA-GAGGGGTTTGGAGATGAGATGAGAATGAGA
JMFS158D01+ AACC
JMFS107H04+ AACCGCTTAACAGAAGGGAAAGAGAGAAA-GAGGGGTTTGGA
JMFS086C09+ AACCGCTTAACAGAAGGGAAAGAGAGAAA-GAGGGGTTTGGAGATGAGATGAGAATGAGA
rJMSF020J03+ ACCGCTTAACAGAAGGGAAAGAGAGAAACGAGGGGTTTGGAGATGAGATGAGAATGAGA
JMSF009C09+ AACCGCTTAACAGAAGGGAAAGAGAGAAA-GAGGGGTTTGGAGATGAGATGAGAATGAGA
____________________________________________________________
consensus AACCGCTTAACAGAAGGGAAAGAGAGAAA-GAGGGGTTTGGAGATGAGATGAGAATGAGA
. : . : . : . : . : . :
JMFF028B14+ TGAATTGGTGGGT
JMFS086C09+ TGAATTGGTGGGTGGGGAAAATCAAGAAAGAAATA
rJMSF020J03+ TGAATTGGTGGGTGGGGAAAATCANGAAAGAAATA
JMSF009C09+ TGAATTGGTGGGTGGGGAAAATCAAGAAAGAAATAAAAGAGAGAAAATAAAAACACATTC
____________________________________________________________
consensus TGAATTGGTGGGTGGGGAAAATCAAGAAAGAAATAAAAGAGAGAAAATAAAAACACATTC