Contig 006408:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008P16Sequence206006408 (4)756021382ref|XP_009628123.1|7e-10PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF036A01Sequence687006408 (4)ref|XP_007020973.1|6e-04F-box/RNI superfamily protein [Theobroma cacao] gb|EOY12498.1| F-box/RNI superfa735011411 (3)ref|XP_009628123.1|4e-10PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF038K17Sequence691006408 (4)ref|XP_009607416.1|2e-09PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Nicotiana tomentosiform925011382 (29)ref|XP_009622218.1|1e-56PREDICTED: pollen-specific protein C13-like [Nicotiana tomentosiformis]
JMSF044J17Sequence823006408 (4)ref|XP_010678749.1|4e-12PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu802011411 (3)ref|XP_004297176.2|3e-08PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Fragaria vesca subsp. vesca]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF038K17+ GGACTGATGATCTCAAAATTAGTGATCCCTTTACAACGACT
                      ____________________________________________________________
consensus GGACTGATGATCTCAAAATTAGTGATCCCTTTACAACGACT
 
. : . : . : . : . : . :
JMSF038K17+ GAAAGACAGCTCCTCAAGATTAGGAATTCTGTACACAATTCCCTTAACATTATCACTAAA
                      ____________________________________________________________
consensus GAAAGACAGCTCCTCAAGATTAGGAATTCTGTACACAATTCCCTTAACATTATCACTAAA
 
. : . : . : . : . : . :
JMSF038K17+ TTCAGCATGCTTGAAAGCTAATGAAGTGGCGCTGGGAAATATACAACCAGGGATCGACAA
                      ____________________________________________________________
consensus TTCAGCATGCTTGAAAGCTAATGAAGTGGCGCTGGGAAATATACAACCAGGGATCGACAA
 
. : . : . : . : . : . :
JMSF038K17+ ATCAAAAATTAAATCACCCAGAAACAGTTGCTTAACTGTCCGGCAGGAAAATATACAAGA
                      ____________________________________________________________
consensus ATCAAAAATTAAATCACCCAGAAACAGTTGCTTAACTGTCCGGCAGGAAAATATACAAGA
 
. : . : . : . : . : . :
JMSF038K17+ TGGCAGCTGATGATTATCCGAAATAAACAAGCTAAGTTCCTGTAGACCATTTCTTCGTAC
JMSF044J17+ TTCGTAC
                      ____________________________________________________________
consensus TGGCAGCTGATGATTATCCGAAATAAACAAGCTAAGTTCCTGTAGACCATTTCTTCGTAC
 
. : . : . : . : . : . :
JMSF038K17+ TTTGAGAAGCATTCGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCCGCAACCAAACA
JMSF036A01+ TACAAGCTGCCCATGCCGCAACCAANCC
JMSF044J17+ TTTGAGAGGCATTTCAAGAAGTCCTTATCAAATACAAGCTGCCCATGCCGCAACCAAACC
                      ____________________________________________________________
consensus TTTGAGAGGCATTTGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCCGCAACCAAACC
 
. : . : . : . : . : . :
JMSF038K17+ TCGTTCCAGTGAGTCGAGAGCAGAGCAGTTCTGGCCGCGTCTCGAGTAGGCAAGCACTCC
JMSF036A01+ TCATTCCA-TGAGTAGAGAGCAGAGCAGTTCTGGCTGCGTCTCGAGTAGGCAAACACTCC
JMSF044J17+ TCATTCCATTGAGTAGAGAGCAGAGCAGTTCTGGCTGCGTCTCGAGTAGGCAAACACTCC
                      ____________________________________________________________
consensus TCATTCCATTGAGTAGAGAGCAGAGCAGTTCTGGCTGCGTCTCGAGTAGGCAAACACTCC
 
. : . : . : . : . : . :
JMSF038K17+ AAAATCCTTTCCTTCACTTCTGCTGGCAGTTCACTTATTGCATCCATTCCTGCACCCGCT
JMSF036A01+ AGAATCCTTTCTTTCACTTCCACTGGCAGTTCACTTATTACGTCCCTTCCTGCATCCTCT
JMSF044J17+ AGAATCCTTTCTTTCACTTCCACTGGCAGTTCACTTATTACGTCCCTTCCTGCATCCTCT
                      ____________________________________________________________
consensus AGAATCCTTTCTTTCACTTCCACTGGCAGTTCACTTATTACGTCCCTTCCTGCATCCTCT
 
. : . : . : . : . : . :
JMSF038K17+ TCGGATTTTCTTCGAC
JMSF036A01+ TTGGATTTTCTCCGACAACTCGCCATTAAACTGGAAACCGAAGTTAAAATCGATTTGCAT
JMSF044J17+ TTGGATTTTCTCCGACAACTCGCCATTAAACTGGAAACCGAAGTTAAAATCGATTTGCAT
                      ____________________________________________________________
consensus TTGGATTTTCTCCGACAACTCGCCATTAAACTGGAAACCGAAGTTAAAATCGATTTGCAT
 
. : . : . : . : . : . :
JMSF036A01+ TCCAATAGCATTCCAATTTAGCCCACAAGGTTTTGGAAACAACAGAAATTTGGTTTAATT
JMSF044J17+ TCCAATAGCATTCCAATTTAGCCCACAAGGTTTTGGAAACAACAGAAATTTGGTTTAATT
                      ____________________________________________________________
consensus TCCAATAGCATTCCAATTTAGCCCACAAGGTTTTGGAAACAACAGAAATTTGGTTTAATT
 
. : . : . : . : . : . :
JMSF036A01+ TGGGAAGAAATAAGAGATTAGGGGGAAAAGTGTTAGAAACCCTTGCCTTCTCTACTGCCC
JMSF044J17+ TGGGAAGAAATAAGAGATTAGGGGGAAAAGTGTTAGAAACCCTTGCCTTCTCTACTGCCC
                      ____________________________________________________________
consensus TGGGAAGAAATAAGAGATTAGGGGGAAAAGTGTTAGAAACCCTTGCCTTCTCTACTGCCC
 
. : . : . : . : . : . :
JMSF036A01+ GGATGTTTTGCGTTTGGAACGAACAGAATACTGCGAGGCTTTTCTTTGGGCCCTTGGCGG
JMSF044J17+ GGATGTTTTGCGTTTGGAACGAACAGAATACTGCGAGGCTTTTCTTTGGGCCCTTGGCGG
                      ____________________________________________________________
consensus GGATGTTTTGCGTTTGGAACGAACAGAATACTGCGAGGCTTTTCTTTGGGCCCTTGGCGG
 
. : . : . : . : . : . :
JMSF036A01+ CGACAGTGGGCTATTAGTAATACATCACTGTGCTAAATGTTCAAGCTAAAAATACAAGCT
JMSF044J17+ CGACAGTGGGCTATTAGTAATACATCACTGTGCTAAATGTTCAAGCTAAAAATACAAGCT
                      ____________________________________________________________
consensus CGACAGTGGGCTATTAGTAATACATCACTGTGCTAAATGTTCAAGCTAAAAATACAAGCT
 
. : . : . : . : . : . :
JMSF036A01+ TCATTTGAAAAGGAAATTAGGAAGCTAAGAGTTGGGAAGAAAACAGAGATTGGGAAAAAG
JMSF044J17+ TCATTTGAAAAGGAAATTAGGAAGCTAAGAGTTGGGAAGAAAACAGAGATTGGGAAAAAG
                      ____________________________________________________________
consensus TCATTTGAAAAGGAAATTAGGAAGCTAAGAGTTGGGAAGAAAACAGAGATTGGGAAAAAG
 
. : . : . : . : . : . :
JMSF036A01+ TGACAGAAACCCTCGCCTGTGATGTTTGGTCTGGGTTAGGAAAGCCGGAGGGAAACGGAT
JMSF044J17+ TGACAGAAACCCTCGCCTGTGATGTTTGGTCTGGGTTAGGAAAGCCGGAGGGAAACGGAT
JMSF008P16+ TGGGTTAGGAAAGCCGGAGGGAAACGGAT
                      ____________________________________________________________
consensus TGACAGAAACCCTCGCCTGTGATGTTTGGTCTGGGTTAGGAAAGCCGGAGGGAAACGGAT
 
. : . : . : . : . : . :
JMSF036A01+ CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
JMSF044J17+ CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
JMSF008P16+ CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
                      ____________________________________________________________
consensus CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
 
. : . : . : . : . : . :
JMSF036A01+ AGTGGAGA
JMSF044J17+ AGTGGAGA
JMSF008P16+ AGTGGAGAGACGGCTGAGTCGCAGGGCTGAAGAGTGTTGAACTAGAGTCTAGAGATTTCC
                      ____________________________________________________________
consensus AGTGGAGAGACGGCTGAGTCGCAGGGCTGAAGAGTGTTGAACTAGAGTCTAGAGATTTCC