Contig 006408:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008P16Sequence206006408 (4)756021382ref|XP_009628123.1|7e-10PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF036A01Sequence687006408 (4)ref|XP_007020973.1|6e-04F-box/RNI superfamily protein [Theobroma cacao] gb|EOY12498.1| F-box/RNI superfa735011411 (3)ref|XP_009628123.1|4e-10PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X2 [Nicotiana to
JMSF038K17Sequence691006408 (4)ref|XP_009607416.1|2e-09PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Nicotiana tomentosiform925011382 (29)ref|XP_009622218.1|1e-56PREDICTED: pollen-specific protein C13-like [Nicotiana tomentosiformis]
JMSF044J17Sequence823006408 (4)ref|XP_010678749.1|4e-12PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Beta vulgaris subsp. vu802011411 (3)ref|XP_004297176.2|3e-08PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Fragaria vesca subsp. vesca]

Alignment

This contig is upended


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JMSF038K17+                              GGACTGATGATCTCAAAATTAGTGATCCCTTTACAACGACT
                      ____________________________________________________________
consensus                                GGACTGATGATCTCAAAATTAGTGATCCCTTTACAACGACT
 
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JMSF038K17+           GAAAGACAGCTCCTCAAGATTAGGAATTCTGTACACAATTCCCTTAACATTATCACTAAA
                      ____________________________________________________________
consensus             GAAAGACAGCTCCTCAAGATTAGGAATTCTGTACACAATTCCCTTAACATTATCACTAAA
 
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JMSF038K17+           TTCAGCATGCTTGAAAGCTAATGAAGTGGCGCTGGGAAATATACAACCAGGGATCGACAA
                      ____________________________________________________________
consensus             TTCAGCATGCTTGAAAGCTAATGAAGTGGCGCTGGGAAATATACAACCAGGGATCGACAA
 
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JMSF038K17+           ATCAAAAATTAAATCACCCAGAAACAGTTGCTTAACTGTCCGGCAGGAAAATATACAAGA
                      ____________________________________________________________
consensus             ATCAAAAATTAAATCACCCAGAAACAGTTGCTTAACTGTCCGGCAGGAAAATATACAAGA
 
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JMSF038K17+           TGGCAGCTGATGATTATCCGAAATAAACAAGCTAAGTTCCTGTAGACCATTTCTTCGTAC
JMSF044J17+                                                                TTCGTAC
                      ____________________________________________________________
consensus             TGGCAGCTGATGATTATCCGAAATAAACAAGCTAAGTTCCTGTAGACCATTTCTTCGTAC
 
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JMSF038K17+           TTTGAGAAGCATTCGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCCGCAACCAAACA
JMSF036A01+                                           TACAAGCTGCCCATGCCGCAACCAANCC
JMSF044J17+           TTTGAGAGGCATTTCAAGAAGTCCTTATCAAATACAAGCTGCCCATGCCGCAACCAAACC
                      ____________________________________________________________
consensus             TTTGAGAGGCATTTGAAGAAGTCCTTATCAAATACAAGCTGCCCATGCCGCAACCAAACC
 
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JMSF038K17+           TCGTTCCAGTGAGTCGAGAGCAGAGCAGTTCTGGCCGCGTCTCGAGTAGGCAAGCACTCC
JMSF036A01+           TCATTCCA-TGAGTAGAGAGCAGAGCAGTTCTGGCTGCGTCTCGAGTAGGCAAACACTCC
JMSF044J17+           TCATTCCATTGAGTAGAGAGCAGAGCAGTTCTGGCTGCGTCTCGAGTAGGCAAACACTCC
                      ____________________________________________________________
consensus             TCATTCCATTGAGTAGAGAGCAGAGCAGTTCTGGCTGCGTCTCGAGTAGGCAAACACTCC
 
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JMSF038K17+           AAAATCCTTTCCTTCACTTCTGCTGGCAGTTCACTTATTGCATCCATTCCTGCACCCGCT
JMSF036A01+           AGAATCCTTTCTTTCACTTCCACTGGCAGTTCACTTATTACGTCCCTTCCTGCATCCTCT
JMSF044J17+           AGAATCCTTTCTTTCACTTCCACTGGCAGTTCACTTATTACGTCCCTTCCTGCATCCTCT
                      ____________________________________________________________
consensus             AGAATCCTTTCTTTCACTTCCACTGGCAGTTCACTTATTACGTCCCTTCCTGCATCCTCT
 
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JMSF038K17+           TCGGATTTTCTTCGAC                                            
JMSF036A01+           TTGGATTTTCTCCGACAACTCGCCATTAAACTGGAAACCGAAGTTAAAATCGATTTGCAT
JMSF044J17+           TTGGATTTTCTCCGACAACTCGCCATTAAACTGGAAACCGAAGTTAAAATCGATTTGCAT
                      ____________________________________________________________
consensus             TTGGATTTTCTCCGACAACTCGCCATTAAACTGGAAACCGAAGTTAAAATCGATTTGCAT
 
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JMSF036A01+           TCCAATAGCATTCCAATTTAGCCCACAAGGTTTTGGAAACAACAGAAATTTGGTTTAATT
JMSF044J17+           TCCAATAGCATTCCAATTTAGCCCACAAGGTTTTGGAAACAACAGAAATTTGGTTTAATT
                      ____________________________________________________________
consensus             TCCAATAGCATTCCAATTTAGCCCACAAGGTTTTGGAAACAACAGAAATTTGGTTTAATT
 
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JMSF036A01+           TGGGAAGAAATAAGAGATTAGGGGGAAAAGTGTTAGAAACCCTTGCCTTCTCTACTGCCC
JMSF044J17+           TGGGAAGAAATAAGAGATTAGGGGGAAAAGTGTTAGAAACCCTTGCCTTCTCTACTGCCC
                      ____________________________________________________________
consensus             TGGGAAGAAATAAGAGATTAGGGGGAAAAGTGTTAGAAACCCTTGCCTTCTCTACTGCCC
 
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JMSF036A01+           GGATGTTTTGCGTTTGGAACGAACAGAATACTGCGAGGCTTTTCTTTGGGCCCTTGGCGG
JMSF044J17+           GGATGTTTTGCGTTTGGAACGAACAGAATACTGCGAGGCTTTTCTTTGGGCCCTTGGCGG
                      ____________________________________________________________
consensus             GGATGTTTTGCGTTTGGAACGAACAGAATACTGCGAGGCTTTTCTTTGGGCCCTTGGCGG
 
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JMSF036A01+           CGACAGTGGGCTATTAGTAATACATCACTGTGCTAAATGTTCAAGCTAAAAATACAAGCT
JMSF044J17+           CGACAGTGGGCTATTAGTAATACATCACTGTGCTAAATGTTCAAGCTAAAAATACAAGCT
                      ____________________________________________________________
consensus             CGACAGTGGGCTATTAGTAATACATCACTGTGCTAAATGTTCAAGCTAAAAATACAAGCT
 
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JMSF036A01+           TCATTTGAAAAGGAAATTAGGAAGCTAAGAGTTGGGAAGAAAACAGAGATTGGGAAAAAG
JMSF044J17+           TCATTTGAAAAGGAAATTAGGAAGCTAAGAGTTGGGAAGAAAACAGAGATTGGGAAAAAG
                      ____________________________________________________________
consensus             TCATTTGAAAAGGAAATTAGGAAGCTAAGAGTTGGGAAGAAAACAGAGATTGGGAAAAAG
 
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JMSF036A01+           TGACAGAAACCCTCGCCTGTGATGTTTGGTCTGGGTTAGGAAAGCCGGAGGGAAACGGAT
JMSF044J17+           TGACAGAAACCCTCGCCTGTGATGTTTGGTCTGGGTTAGGAAAGCCGGAGGGAAACGGAT
JMSF008P16+                                          TGGGTTAGGAAAGCCGGAGGGAAACGGAT
                      ____________________________________________________________
consensus             TGACAGAAACCCTCGCCTGTGATGTTTGGTCTGGGTTAGGAAAGCCGGAGGGAAACGGAT
 
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JMSF036A01+           CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
JMSF044J17+           CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
JMSF008P16+           CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
                      ____________________________________________________________
consensus             CAGAGTAGCATACGCCAGACGGAGAAGACTAAGGCCGGCTGCCGGTGGAGCTGAGTGGAG
 
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JMSF036A01+           AGTGGAGA                                                    
JMSF044J17+           AGTGGAGA                                                    
JMSF008P16+           AGTGGAGAGACGGCTGAGTCGCAGGGCTGAAGAGTGTTGAACTAGAGTCTAGAGATTTCC
                      ____________________________________________________________
consensus             AGTGGAGAGACGGCTGAGTCGCAGGGCTGAAGAGTGTTGAACTAGAGTCTAGAGATTTCC