Contig 006406:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008O16Sequence219006406 (3)648011253 (3)ref|XP_002533134.1|1e-102acyl-CoA oxidase, putative [Ricinus communis] gb|EEF29246.1| acyl-CoA oxidase, p
JMSF018E24Sequence461006406 (3)ref|XP_006355366.1|3e-41PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Solanum tuberosum]634011253 (3)ref|XP_002533134.1|8e-103acyl-CoA oxidase, putative [Ricinus communis] gb|EEF29246.1| acyl-CoA oxidase, p
JMSF028O19Sequence662006406 (3)ref|XP_006355366.1|1e-64PREDICTED: acyl-coenzyme A oxidase 2, peroxisomal-like [Solanum tuberosum]723019342ref|XP_009589375.1|267PREDICTED: uncharacterized protein LOC104086490, partial [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF028O19+             GAAGGCCTTGAACATNGGAACCATGATGAAGCTCAGTCATTGCAAAGCAACCGGTGTA
                      ____________________________________________________________
consensus               GAAGGCCTTGAACATNGGAACCATGATGAAGCTCAGTCATTGCAAAGCAACCGGTGTA
 
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JMSF028O19+           TTCCAGGTTGTCTATGCCTTCAAAGTACTTGTCTCTGTGTTTCTTAGTTCCCAAATTGAG
                      ____________________________________________________________
consensus             TTCCAGGTTGTCTATGCCTTCAAAGTACTTGTCTCTGTGTTTCTTAGTTCCCAAATTGAG
 
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JMSF028O19+           AACAGAGCCTCCCCAAAGACTGTACTGAACACCCAGCTTGATACCTAAAGAAATATCAAC
                      ____________________________________________________________
consensus             AACAGAGCCTCCCCAAAGACTGTACTGAACACCCAGCTTGATACCTAAAGAAATATCAAC
 
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JMSF018E24+                         CCGCAATAGCGAAATACTTAACAGGGTCGTCGACCACGTATCTGAA
JMSF028O19+           GCTACCTGCAGCCTCCGCAATAGCGAAATACTTAACAGGGTCGTCGACCACGTAT--GAA
                      ____________________________________________________________
consensus             GCTACCTGCAGCCTCCGCAATAGCGAAATACTTAACAGGGTCGTCGACCACGTATCTGAA
 
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JMSF018E24+           GGGCCTTATCCCTGCCTCATGGACCAGACCCCTAAGCTGCCTCATGCACAATTCCCTGTG
JMSF028O19+           GGGCCTTATCCCTGCCTCATGGACCAGGCCCCTAAGCTGCCTCATGCACAATTCCCTGTG
                      ____________________________________________________________
consensus             GGGCCTTATCCCTGCCTCATGGACCAGGCCCCTAAGCTGCCTCATGCACAATTCCCTGTG
 
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JMSF018E24+           CTCATCCTTGGAGATCTCGATAGGCGTCTGCAAATCCGGCCTGGATTTGAAGAACTCGTA
JMSF028O19+           CTCATCCTTGGAGATCTCGATAGGCGTCTGCAAATCCGGCCTGGATTTGAAGAACTCGTA
                      ____________________________________________________________
consensus             CTCATCCTTGGAGATCTCGATAGGCGTCTGCAAATCCGGCCTGGATTTGAAGAACTCGTA
 
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JMSF018E24+           CACCTTATCTTGGATGTCTCGGTGCCTCCCTTTCATGTACTGCAACAACATATCCGTCCT
JMSF028O19+           CACCTTATCTTGGATGTCTCGGTGCCTCCCTTTCATGTACTGCAACAACATATCCGTCCT
                      ____________________________________________________________
consensus             CACCTTATCTTGGATGTCTCGGTGCCTCCCTTTCATGTACTGCAACAACATATCCGTCCT
 
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JMSF018E24+           CACCTTCAACACCTTCGCCTTCCCCTTCCCCTTCCCCGCGCACATTAACATCTCCAGGCC
JMSF028O19+           CACCTTCAACACCTTCGCCTTCCCCTTCCCCTTCCCCGCGCACATTAACATCTCCAGGCC
                      ____________________________________________________________
consensus             CACCTTCAACACCTTCGCCTTCCCCTTCCCCTTCCCCGCGCACATTAACATCTCCAGGCC
 
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JMSF018E24+           GCGATCCGGAAAGTCCGGGAAAAGCGCCGGGTTGAGGTGCAATGACAGCCGCCGCATGCG
JMSF028O19+           GCGATCCGGAAAGTCCGGGAAAAGCGCCGGGTTGAGGTGCAATGACAGCCGCCGCATGCG
JMSF008O16+                                AAGCGCCGGGTTGAGGTGCAATGACAGCCGCCGCATGCG
                      ____________________________________________________________
consensus             GCGATCCGGAAAGTCCGGGAAAAGCGCCGGGTTGAGGTGCAATGACAGCCGCCGCATGCG
 
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JMSF018E24+           GCGGTGGATGAGCTGCATGTCGTCGCGATTTTCATCTTCCACCGCCGTGTCATCGGAACT
JMSF028O19+           GCGGTGGATGAGCTGCATGTCGTCGCGATTTTCATCTTCCACCGCCGTGTCATCGGAACT
JMSF008O16+           GCGGTGGATGAGCTGCATGTCGTCGCGATTTTCATCTTCCACCGCCGTGTCATCGGAACT
                      ____________________________________________________________
consensus             GCGGTGGATGAGCTGCATGTCGTCGCGATTTTCATCTTCCACCGCCGTGTCATCGGAACT
 
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JMSF018E24+           TCGTGACGTCACCTCCGGGAGGTCCATTGCCTTGCTCTAATTGTCAAATCAAAT      
JMSF028O19+           TCGTGACGTCACCTCCGGGAGGTCCATTGCCTTGCTCTAATTGTCAAATCAAATGTATTG
JMSF008O16+           TCGTGACGTCACCTCCGGGAGGTCCATTGCCTTGCTCTAATTGTCAAATCAAATGTATTG
                      ____________________________________________________________
consensus             TCGTGACGTCACCTCCGGGAGGTCCATTGCCTTGCTCTAATTGTCAAATCAAATGTATTG
 
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JMSF028O19+           TATAT                                                       
JMSF008O16+           TATATGAAACGAGAATCGTATTCGTAGTCGTATATATATACATACGCGTCGGTATAGGTC
                      ____________________________________________________________
consensus             TATATGAAACGAGAATCGTATTCGTAGTCGTATATATATACATACGCGTCGGTATAGGTC