Contig 006403:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008I16Sequence324006403 (3)ref|XP_002309586.2|2e-06hypothetical protein POPTR_0006s26270g [Populus trichocarpa] gb|EEE93109.2| hypo708006403 (3)ref|XP_009606397.1|8e-58PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X1 [Nicotian
JMSF049N06Sequence686006403 (3)ref|XP_009783574.1|1e-84PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X1 [Nicotian

Alignment

This contig is upended


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rJMSF008I16-                                  AATTGAAGAATACATAGATAGGGAAAAGATAAAGCA
                      ____________________________________________________________
consensus                                     AATTGAAGAATACATAGATAGGGAAAAGATAAAGCA
 
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rJMSF008I16-          GCAACTTGCAAACTACCATGTTGGTGTTCGTAGTGATGATGCTCCTGTATTCATCAAAAC
                      ____________________________________________________________
consensus             GCAACTTGCAAACTACCATGTTGGTGTTCGTAGTGATGATGCTCCTGTATTCATCAAAAC
 
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rJMSF008I16-          CTCAAACTACCCTTACTCTATTCAATTTAAATATCTGAGCCAGATAGACGAAAAAAAATA
                      ____________________________________________________________
consensus             CTCAAACTACCCTTACTCTATTCAATTTAAATATCTGAGCCAGATAGACGAAAAAAAATA
 
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rJMSF008I16-          CCTCCCCGAATGGTCTTCACATCCAAGATGTTCCACCATTGCAAGAGTTGCTGCTTTCGT
                      ____________________________________________________________
consensus             CCTCCCCGAATGGTCTTCACATCCAAGATGTTCCACCATTGCAAGAGTTGCTGCTTTCGT
 
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rJMSF008I16-          TCTGGTGCATCACTCGGATATACAATAGCAGGAGCCAAGGAAAAAGGAATATATCATAAA
                      ____________________________________________________________
consensus             TCTGGTGCATCACTCGGATATACAATAGCAGGAGCCAAGGAAAAAGGAATATATCATAAA
 
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rJMSF008I16-          TCGCATGATCGACCCAAAGTTACATTATATTTGGCAAGTGTAGTTTCCTTTGCTGGCTCC
                      ____________________________________________________________
consensus             TCGCATGATCGACCCAAAGTTACATTATATTTGGCAAGTGTAGTTTCCTTTGCTGGCTCC
 
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rJMSF008I16-          ATCTCCGCCATCAACATTTAATTTTGTTCCAAGCAACACTGAGAGAGATAATCTCTTCTT
                      ____________________________________________________________
consensus             ATCTCCGCCATCAACATTTAATTTTGTTCCAAGCAACACTGAGAGAGATAATCTCTTCTT
 
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rJMSF008I16-          CACCAAAATCTCCAAGGATCCTTGTATGGAGGAACATAGTTTTCTGTAGGAGGGAGAAGC
                      ____________________________________________________________
consensus             CACCAAAATCTCCAAGGATCCTTGTATGGAGGAACATAGTTTTCTGTAGGAGGGAGAAGC
 
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rJMSF008I16-          CGGAAAGAAGCCACGCTCTTTTCTAAGAACGGTCCCATTTGGTCCCATTGCTTGCCAAGT
                      ____________________________________________________________
consensus             CGGAAAGAAGCCACGCTCTTTTCTAAGAACGGTCCCATTTGGTCCCATTGCTTGCCAAGT
 
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rJMSF008I16-          GCTGATGCACTAAGAGTATACAAGTAACCATCTCGTTCAGCTGTTGAAGCAACGTAGTGG
                      ____________________________________________________________
consensus             GCTGATGCACTAAGAGTATACAAGTAACCATCTCGTTCAGCTGTTGAAGCAACGTAGTGG
 
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rJMSF008I16-          CGGAAAAGATTCGACTCTAGAGCCGTTTTGGTTGGTGATTTGCGAACAAGGTACTCAAAA
JMSF049N06+                                            GGTGATTTGCGAACAAGGTACTCAAAA
                      ____________________________________________________________
consensus             CGGAAAAGATTCGACTCTAGAGCCGTTTTGGTTGGTGATTTGCGAACAAGGTACTCAAAA
 
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rJMSF008I16-          TACCAATATGCATCACCATCAATTTTGGAAGAATGTGCATCAAGAAGTGAACTTTCAGCC
JMSF049N06+           TACCAATATGCATCACCATCAATTTTGGAAGAATGTGCATCAAGAAGTGAACTTTCAGCC
                      ____________________________________________________________
consensus             TACCAATATGCATCACCATCAATTTTGGAAGAATGTGCATCAAGAAGTGAACTTTCAGCC
 
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rJMSF008I16-          AACCGTTGAGTT                                                
JMSF049N06+           AACCGTTGAGTTGAGGTTACCCGCAAAGCAGATTTATCAGCTAAAACAGAGTCAGCGACA
                      ____________________________________________________________
consensus             AACCGTTGAGTTGAGGTTACCCGCAAAGCAGATTTATCAGCTAAAACAGAGTCAGCGACA
 
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JMSF049N06+           TCCTTAGCACTCCAGCTACTTTTCTCTGACTTTAGGAATTGTGAATTGAGTGGACCTATC
                      ____________________________________________________________
consensus             TCCTTAGCACTCCAGCTACTTTTCTCTGACTTTAGGAATTGTGAATTGAGTGGACCTATC
 
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JMSF049N06+           GTAACAGAAATAATAAGATTATCAATGATGTCAACTCTTTCAGACACAATGCGGAGGCGT
                      ____________________________________________________________
consensus             GTAACAGAAATAATAAGATTATCAATGATGTCAACTCTTTCAGACACAATGCGGAGGCGT
 
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JMSF049N06+           GCATCAGGTGACAGTGGTGCAGCCGATGAATAACGCTCTGGTTTTCTGGATTCAACCCAT
                      ____________________________________________________________
consensus             GCATCAGGTGACAGTGGTGCAGCCGATGAATAACGCTCTGGTTTTCTGGATTCAACCCAT
 
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JMSF049N06+           TTGAAGACAAATCCTTTGGAAGGAAGCTCTGTGGGGTATATATAGGAATAAGAATTAGTA
JMSF008I16+                                               TATATATAGGAATAAGAATTAGTA
                      ____________________________________________________________
consensus             TTGAAGACAAATCCTTTGGAAGGAAGCTCTGTGGGGTATATATAGGAATAAGAATTAGTA
 
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JMSF049N06+           TTATCAACAAATGAGGCCATTTTCACATCTTCTTCAGCACTTGAGCTTAAAGATGGGAAA
JMSF008I16+           TTATCAACAAATGAGGCCATTTTCACATCTTCTTCAGCACTTGAGCTTAAAGATGGGAAA
                      ____________________________________________________________
consensus             TTATCAACAAATGAGGCCATTTTCACATCTTCTTCAGCACTTGAGCTTAAAGATGGGAAA
 
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JMSF049N06+           ACCAGTGAAAGTGAAGATAAGCCAGTGAACACCAAATCCCTTCTTGAAACCCCATTGTGC
JMSF008I16+           ACCAGTGAAAGTGAAGATAAGCCAGTGAACACCAAATCCCTTCTTGAAACCCCATTGTGC
                      ____________________________________________________________
consensus             ACCAGTGAAAGTGAAGATAAGCCAGTGAACACCAAATCCCTTCTTGAAACCCCATTGTGC
 
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JMSF049N06+           TGAGTGGGTTCTCTGCCATTGGTCGAAAACGCCATGATTTTCTCCCATTTTCTTTTCTTT
JMSF008I16+           TGAGTGGGTTCTCTGCCATTGGTCGAAAACGCCATGATTTTCTCCCATTTTCTTTTCTTT
                      ____________________________________________________________
consensus             TGAGTGGGTTCTCTGCCATTGGTCGAAAACGCCATGATTTTCTCCCATTTTCTTTTCTTT
 
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JMSF049N06+           GGCGTGGCCAGTGAGCTCTGGTTTTTTAAGATGGGGAAAGAATGATTGGAAGATGTAGGG
JMSF008I16+           GGCGTGGCCAGTGAGCTCTGGTTTTTTAAGATGGGGAAAGAATGATTGGAAGATGTAGGG
                      ____________________________________________________________
consensus             GGCGTGGCCAGTGAGCTCTGGTTTTTTAAGATGGGGAAAGAATGATTGGAAGATGTAGGG
 
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JMSF049N06+           AGGGGAGGAGAGGAGAGAAGAAGTATTCTGGCAGCCATGCTTCTTCTTCAGTTCTTCC  
JMSF008I16+           AGGGGAGGAGAGGAGAGAAGAAGTATTCTGGCAGCCATGCTTCTTCTTCAGTTCTTCCCC
                      ____________________________________________________________
consensus             AGGGGAGGAGAGGAGAGAAGAAGTATTCTGGCAGCCATGCTTCTTCTTCAGTTCTTCCCC