Contig 006400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032O20Sequence572006400 (4)emb|CDP13803.1|5e-100unnamed protein product [Coffea canephora]704004175 (6)ref|XP_011095434.1|4e-54PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMFF051L14Sequence622006400 (4)emb|CDP13803.1|3e-96unnamed protein product [Coffea canephora]585004175 (6)
JMSF008B24Sequence276006400 (4)emb|CDP13803.1|1e-09unnamed protein product [Coffea canephora]753004175 (6)ref|XP_011095434.1|3e-81PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]
JMSF033O05Sequence672006400 (4)emb|CDP13803.1|2e-107unnamed protein product [Coffea canephora]648004175 (6)ref|XP_011095434.1|2e-53PREDICTED: cell differentiation protein RCD1 homolog [Sesamum indicum]

Alignment

This contig is upended


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JMSF033O05+                                                           CCATTGTGCGCA
                      ____________________________________________________________
consensus                                                             CCATTGTGCGCA
 
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JMFF051L14+                                                GATAACATCACTGTCATCCACCT
JMSF033O05+           GGCACAGGGGAATTATTTCTGTGGACAGGAGAAAATTGATAACATCACTGTCATCCACCT
JMFF032O20+                                           AAATTGATAACATCACTGTCATCCACCT
                      ____________________________________________________________
consensus             GGCACAGGGGAATTATTTCTGTGGACAGGAGAAAATTGATAACATCACTGTCATCCACCT
 
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JMFF051L14+           TCACAAGGGCACCAATGACACCTAAGCTAGTAAGCCTAAGATATTCGAAAGGTCTTGATT
JMSF033O05+           TCACAAGGGCACCAATGACACCTAAGCTAGTAAGCCTAAGATATTCGAAAGGTCTTGATT
JMFF032O20+           TCACAAGGGCACCAATGACACCTAAGCTAGTAAGCCTAAGATATTCGAAAGGTCTTGATT
                      ____________________________________________________________
consensus             TCACAAGGGCACCAATGACACCTAAGCTAGTAAGCCTAAGATATTCGAAAGGTCTTGATT
 
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JMFF051L14+           TGCTTGTTGTATTAAGAAAAGGATACAAATAGAGAGGAATATGGGCATTAAGAAATAGCA
JMSF033O05+           TGCTTGTTGTATTAAGAAAAGGATACAAATAGAGAGGAATATGGGCATTAAGAAATAGCA
JMFF032O20+           TGCTTGTTGTATTAAGAAAAGGATACAAATAGAGAGGAATATGGGCATTAAGAAATAGCA
                      ____________________________________________________________
consensus             TGCTTGTTGTATTAAGAAAAGGATACAAATAGAGAGGAATATGGGCATTAAGAAATAGCA
 
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JMFF051L14+           TTCTGGTGTCTGGGTGAGAGGCCACACACTGAAGAAGAGCAAGTGCATTACAAACTCTAT
JMSF033O05+           TTCTGGTGTCTGGGTGAGAGGCCACACACTGAAGAAGAGCAAGTGCATTACAAACTCTAT
JMFF032O20+           TTCTGGTGTCTGGGTGAGAGGCCACACACTGAAGAAGAGCAAGTGCATTACAAACTCTAT
                      ____________________________________________________________
consensus             TTCTGGTGTCTGGGTGAGAGGCCACACACTGAAGAAGAGCAAGTGCATTACAAACTCTAT
 
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JMFF051L14+           TTGATTGTGCTGGAGTCAGGTTTGGTGGTGACAAAACAGGGTAGATGGAGACAATTTCCT
JMSF033O05+           TTGATTGTGCTGGAGTCAGGTTTGGTGGTGACAAAACAGGGTAGATGGAGACAATTTCCT
JMFF032O20+           TTGATTGTGCTGGAGTCAGGTTTGGTGGTGACAAAACAGGGTAGATGGAGACAATTTCCT
                      ____________________________________________________________
consensus             TTGATTGTGCTGGAGTCAGGTTTGGTGGTGACAAAACAGGGTAGATGGAGACAATTTCCT
 
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JMFF051L14+           GCAACAGTGCGGCAATAGTACCAAACGAATTCCATAGTAATGGGGCCAGATCTTGAAATA
JMSF033O05+           GCAACAGTGCGGCAATAGTACCAAACGAATTCCATAGTAATGGGGCCAGATCTTGAAATA
JMFF032O20+           GCAACAGTGCGGCAATAGTACCAAACGAATTCCATAGTAATGGGGCCAGATCTTGAAATA
                      ____________________________________________________________
consensus             GCAACAGTGCGGCAATAGTACCAAACGAATTCCATAGTAATGGGGCCAGATCTTGAAATA
 
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JMFF051L14+           ATTCTCTCTTCTTGGAGAGTTCAAGAAGAGCGTTTTCACGGAGATCAGGATTGCTAAGAT
JMSF033O05+           ATTCTCTCTTCTTGGAGAGTTCAAGAAGAGCGTTTTCACGGAGATCAGGATTGCTAAGAT
JMFF032O20+           ATTCTCTCTTCTTGGAGAGTTCAAGAAGAGCGTTTTCACGGAGATCAGGATTGCTAAGAT
JMSF008B24+                                   GAAGAGCGTTTTCACGGAGATCAGGATTGCTAAGAT
                      ____________________________________________________________
consensus             ATTCTCTCTTCTTGGAGAGTTCAAGAAGAGCGTTTTCACGGAGATCAGGATTGCTAAGAT
 
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JMFF051L14+           CTAGCACAAGCTGCTCAGCGGATTGCATTTTACGGTCTTTGTTGGGCTGAG         
JMSF033O05+           CTAGCACAAGCTGCTCAGCGGATTGCATTTTACGGTCTTTGTTGGGCTGAG         
JMFF032O20+           CTAGCACAAGCTGCTCAGCGGATTGCATTTTACGGTCTTTGTTGGGCTGAGGTCCGACTG
JMSF008B24+           CTAGCACAAGCTGCTCAGCGGATTGCATTTTACGGTCTTTGTTGGGCTGAGGTCCGACTG
                      ____________________________________________________________
consensus             CTAGCACAAGCTGCTCAGCGGATTGCATTTTACGGTCTTTGTTGGGCTGAGGTCCGACTG
 
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JMFF032O20+           CGGCGGAGGAGGAGGAGGCAGAGGCAGGACCTCCACCGAAGGCGGCGGCGTTAATCGAGA
JMSF008B24+           CGGCGGAGGAGGAGGAGGCAGAGGCAGGACCTCCACCGAAGGCGGCGGCGTTAATCGAGA
                      ____________________________________________________________
consensus             CGGCGGAGGAGGAGGAGGCAGAGGCAGGACCTCCACCGAAGGCGGCGGCGTTAATCGAGA
 
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JMFF032O20+           GACTCTGAGGGAGATTAGCCATCTACGACAGCACCACTGGAATTCT              
JMSF008B24+           GACTCTGAGGGAGATTAGCCATCTACGACAGCACCACTGGAATTCTTCTAGCAATTTCAC
                      ____________________________________________________________
consensus             GACTCTGAGGGAGATTAGCCATCTACGACAGCACCACTGGAATTCTTCTAGCAATTTCAC
 
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JMSF008B24+           TCCAATAACTATTAGGTTTTCTTCTGCTTGATTTTCTATTTTGGGCACGACAACTGATTC
                      ____________________________________________________________
consensus             TCCAATAACTATTAGGTTTTCTTCTGCTTGATTTTCTATTTTGGGCACGACAACTGATTC