Contig 006395:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004O08Sequence262006395 (6)343008417 (3)ref|XP_004235865.1|3e-26PREDICTED: chaperone protein ClpD, chloroplastic isoform X1 [Solanum lycopersic
JMSF007I12Sequence292006395 (6)756011273 (10)ref|XP_009790347.1|2e-84PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF012F23Sequence463006395 (6)824011273 (10)ref|XP_009790347.1|3e-76PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF017H16Sequence582006395 (6)813011273 (10)ref|XP_009790347.1|2e-88PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF028M21Sequence590006395 (6)716011273 (10)ref|XP_009790347.1|6e-78PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]
JMSF029O19Sequence536006395 (6)718011273 (10)ref|XP_009790347.1|2e-77PREDICTED: nucleolar complex protein 4 homolog B [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF012F23+                                            TAATTTCATGATAGCAAATAATATTTT
JMSF029O19+                    TAGAAAAAAAAAAACTACTAATACTAATTTCATGATAGCAAATAATATTTT
JMSF028M21+                        AAAAAAAAAACTACTAATACTAATTTCATGATAGCAAATAATATTTT
JMSF017H16+                             AAAAACTACTAATACTAATTTCATGATAGCAAATAATATTTT
                      ____________________________________________________________
consensus                      TAGAAAAAAAAAAACTACTAATACTAATTTCATGATAGCAAATAATATTTT
 
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JMSF012F23+           TACAAGTAGAAATTAATAAAACACTTAACCAAGGAGTATATATAAATAATATGACAAAAG
JMSF029O19+           TACAAGTAGAAATTAATAAAACACTTAACCAAGGAGTATATATAAATAATATGACAAAAG
JMSF028M21+           TACAAGTAGAAATTAATAAAACACTTAACCAAGGAGTATATATAAATAATATGACAAAAG
JMSF017H16+           TACAAGTAGAAATTAATAAAACACTTAACCAAGGAGTATATATAAATAATATGACAAAAG
                      ____________________________________________________________
consensus             TACAAGTAGAAATTAATAAAACACTTAACCAAGGAGTATATATAAATAATATGACAAAAG
 
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JMSF012F23+           GTTTCAGTTGCAAGTAAGCAAATCTAAAAGTGATAATGCAGTACAAAGTCACGGATGTAT
JMSF029O19+           GTTTCAGTTGCAAGTAAGCAAATCTAAAAGTGATAATGCAGTACAAAGTCACGGATGTAT
JMSF028M21+           GTTTCAGTTGCAAGTAAGCAAATCTAAAAGTGATAATGCAGTACAAAGTCACGGATGTAT
JMSF017H16+           GTTTCAGTTGCAAGTAAGCAAATCTAAAAGTGATAATGCAGTACAAAGTCACGGATGTAT
                      ____________________________________________________________
consensus             GTTTCAGTTGCAAGTAAGCAAATCTAAAAGTGATAATGCAGTACAAAGTCACGGATGTAT
 
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JMSF012F23+           ATAAAGGTACAGTTCTGAGCATACCTGATTTTACACCTTTAATCTACTAATTGAAATTAT
JMSF029O19+           ATAAAGGTACAGTTCTGAGCATACCTGATTTTACACCTTTAATCTACTAATTGAAATTAT
JMSF028M21+           ATAAAGGTACAGTTCTGAGCATACCTGATTTTACACCTTTAATCTACTAATTGAAATTAT
JMSF017H16+           ATAAAGGTACAGTTCTGAGCATACCTGATTTTACACCTTTAATCTACTAATTGAAATTAT
                      ____________________________________________________________
consensus             ATAAAGGTACAGTTCTGAGCATACCTGATTTTACACCTTTAATCTACTAATTGAAATTAT
 
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JMSF012F23+           TTAAAAAATGGTAGCTACCATCTTATTTAATCCTGATATGCCCGTTTGCAAACCTGTTTG
JMSF029O19+           TTAAAAAATGGTAGCTACCATCTTATTTAATCCTGATATGCCCGTTTGCAAACCTGTTTG
JMSF028M21+           TTAAAAAATGGTAGCTACCATCTTATTTAATCCTGATATGCCCGTTTGCAAACCTGTTTG
JMSF017H16+           TTAAAAAATGGTAGCTACCATCTTATTTAATCCTGATATGCCCGTTTGCAAACCTGTTTG
                      ____________________________________________________________
consensus             TTAAAAAATGGTAGCTACCATCTTATTTAATCCTGATATGCCCGTTTGCAAACCTGTTTG
 
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JMSF012F23+           ATGGTTTGCCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
JMSF029O19+           ATGGTTTGCCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
JMSF028M21+           ATGGTTTGCCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
JMSF004O08+                   CCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
JMSF017H16+           ATGGTTTGCCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
JMSF007I12+                   CCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
                      ____________________________________________________________
consensus             ATGGTTTGCCTCGCAGGTATGCTGAGAGGGTTTTGAACTCGAAAGCACTGAGGGCAACTG
 
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JMSF012F23+           GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
JMSF029O19+           GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
JMSF028M21+           GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
JMSF004O08+           GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
JMSF017H16+           GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
JMSF007I12+           GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
                      ____________________________________________________________
consensus             GCGCAAGCCGATGAGTGCAATGGAGGAGAGACGATGAGAACGCTGCGGGAGGAGAAGTGG
 
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JMSF012F23+           AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
JMSF029O19+           AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
JMSF028M21+           AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
JMSF004O08+           AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
JMSF017H16+           AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
JMSF007I12+           AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
                      ____________________________________________________________
consensus             AGACACCGAGGGACAAGTGGCGGAGACGTCGAGCCAGGAGAAGCAGAGACGCCGAGGGAG
 
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JMSF012F23+           AAGAAGCGGAGACGC                                             
JMSF029O19+           AAGAAGCGGAGACGCGGAGCGAAGAGAATCGGAGTCGCGGAGCAAAGAGAAGCGTTGATG
JMSF028M21+           AAGAAGCGGAGACGCGGAGCGAAGAGAATCGGAGTCGCGGAGCAAAGAGAAGCGTTGATG
JMSF004O08+           AAGAAGCGGAGACGCGGAGCGAAGAGAATCGGAGTCGCGGAGCAAAGAGAAGCGTTGATG
JMSF017H16+           AAGAAGCGGAGACGCGGAGCGAAGAGAATCGGAGTCGCGGAGCAAAGAGAAGCGTTGATG
JMSF007I12+           AAGAAGCGGAGACGCGGAGCGAAGAGAATCGGAGTCGCGGAGCAAAGAGAAGCGTTGATG
                      ____________________________________________________________
consensus             AAGAAGCGGAGACGCGGAGCGAAGAGAATCGGAGTCGCGGAGCAAAGAGAAGCGTTGATG
 
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JMSF029O19+           CCGT                                                        
JMSF028M21+           CCGTGTCTTCGAATTGCGAGACAGACGATGAGAGAAGTGAGAGGCTGAGACTGTGCGGTC
JMSF004O08+           CCGTGTCTTCGAATTGCGAGACAGACGAT                               
JMSF017H16+           CCGTGTCTTCGAATTGCGAGACAGACGATGAGAGAAGTGAGAGGCTGAGACTGTGCGGTC
JMSF007I12+           CCGTGTCTTCGAATTGCGAGACAGACGATGAGAGAAGTGAGAGGCTGAGACTGTGCGGTC
                      ____________________________________________________________
consensus             CCGTGTCTTCGAATTGCGAGACAGACGATGAGAGAAGTGAGAGGCTGAGACTGTGCGGTC