Contig 006392:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF025F19-                                                                  CACT
                      ____________________________________________________________
consensus                                                                     CACT
 
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rJMFF012N16-                                                               GCACTAC
rJMSF025F19-          TAGTAGTCAAAACTACAATAACCAAAATCAAAGATAGGTAGAAATGCATACATGCACTAC
rJMSF007E22-                   AAACTACAATAACCAAAATCAAAGATAGGTAGAAATGCATACATGCACTAC
                      ____________________________________________________________
consensus             TAGTAGTCAAAACTACAATAACCAAAATCAAAGATAGGTAGAAATGCATACATGCACTAC
 
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rJMFF012N16-          AGCTTAGGTGAAAATTCAGACCGGGTTCAACAGTTTAGTCGGTTTTACCCGCTTTGCGCC
rJMSF025F19-          AGCTTAGGTGAAAATTCAGACCGGGTTCAACAGTTTAGTCGGTTTTACCCGCTTTGCGCC
rJMSF007E22-          AGCTTAGGTGAAAATTCAGACCGGGTTCAACAGTTTAGTCGGTTTTACCCGCTTTGCGCC
                      ____________________________________________________________
consensus             AGCTTAGGTGAAAATTCAGACCGGGTTCAACAGTTTAGTCGGTTTTACCCGCTTTGCGCC
 
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rJMFF012N16-          TGAAGAAATAATAGAACAGAGACAACAGCCAATGCCAAATCACAAGTAGTAAACTCTTCT
rJMSF025F19-          TGAAGAAATAATAGAACAGAGACAACAGCCAATGCCAAATCACAAGTAGTAAACTCTTCT
rJMSF007E22-          TGAAGAAATAATAGAACAGAGACAACAGCCAATGCCAAATCACAAGTAGTAAACTCTTCT
                      ____________________________________________________________
consensus             TGAAGAAATAATAGAACAGAGACAACAGCCAATGCCAAATCACAAGTAGTAAACTCTTCT
 
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rJMFF012N16-          TCTCGGGTTTGGCCTCGGGGCTTTTTCCAAATAAACCTTTGTAGAGTTCCTTTTGTTTTT
rJMSF025F19-          TCTCGGGTTTGGCCTCGGGGCTTTTTCCAAATAAACCTTTGTAGAGTTCCTTTTGTTTTT
rJMSF007E22-          TCTCGGGTTTGGCCTCGGGGCTTTTTCCAAATAAACCTTTGTAGAGTTCCTTTTGTTTTT
                      ____________________________________________________________
consensus             TCTCGGGTTTGGCCTCGGGGCTTTTTCCAAATAAACCTTTGTAGAGTTCCTTTTGTTTTT
 
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rJMFF012N16-          GATAGACAGCCTTGTCATATTCAGCGAGTAAACGCAATTCCTGTGCAATGGCTTTGTCTT
rJMSF025F19-          GATAGACAGCCTTGTCATATTCAGCGAGTAAACGCAATTCCTGTGCAATGGCTTTGTCTT
rJMSF007E22-          GATAGACAGCCTTGTCATATTCAGCGAGTAAACGCAATTCCTGTGCAATGGCTTTGTCTT
                      ____________________________________________________________
consensus             GATAGACAGCCTTGTCATATTCAGCGAGTAAACGCAATTCCTGTGCAATGGCTTTGTCTT
 
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rJMFF012N16-          GAGGGGCAAACTTGCGTGCTTTAAGGAAGTCTTCACGAGCTGCGTCTGTTTGCCCAAGCT
rJMSF025F19-          GAGGGGCAAACTTGCGTGCTTTAAGGAAGTCTTCACGAGCTGCGTCTGTTTGCCCAAGCT
rJMSF007E22-          GAGGGGCAAACTTGCGTGCTTTAAGGAAGTCTTCACGAGCTGCGTCTGTTTGCCCAAGCT
                      ____________________________________________________________
consensus             GAGGGGCAAACTTGCGTGCTTTAAGGAAGTCTTCACGAGCTGCGTCTGTTTGCCCAAGCT
 
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rJMFF012N16-          CTGCTCTAGCCTTTCCTCTTCTGAATAATGCTTTAACATTGTTTTCATCCTCAACCAACA
rJMSF025F19-          CTGCTCTAGCCTTTCCTCTTCTGAATAATGCTTTAACATTGTTTTCATCCTCAACCAACA
rJMSF007E22-          CTGCTCTAGCCTTTCCTCTTCTGAATAATGCTTTAACATTGTTTTCATCCTCAACCAACA
                      ____________________________________________________________
consensus             CTGCTCTAGCCTTTCCTCTTCTGAATAATGCTTTAACATTGTTTTCATCCTCAACCAACA
 
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rJMFF012N16-          CAATGCTACATTGTGCTATGGCTTCATCATAGCGGTTGAGCTTCAACAAGCATGCTGCCA
rJMSF025F19-          CAATGCTACATTGTGCTATGGCTTCATCATAGCGGTTGAGCTTCAACAAGCATGCTGCCA
rJMSF007E22-          CAATGCTACATTGTGCTATGGCTTCATCATAGCGGTTGAGCTTCAACAAGCATGCTGCCA
                      ____________________________________________________________
consensus             CAATGCTACATTGTGCTATGGCTTCATCATAGCGGTTGAGCTTCAACAAGCATGCTGCCA
 
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rJMFF012N16-          TGTTAAGGTGGCAAGGATTCTTTACAGCTAAAGCCATGTCACGGTATTTACCAAACAACT
rJMSF025F19-          TGTTAAGGTGGCAAGGATTCTTTACAGCTAAAGCCATGTCACGGTATTTACCAAACAACT
rJMSF007E22-          TGTTAAGGTGGCAAGGATTCTTTACAGCTAAAGCCATGTCACGGTATTTACCAAACAACT
                      ____________________________________________________________
consensus             TGTTAAGGTGGCAAGGATTCTTTACAGCTAAAGCCATGTCACGGTATTTACCAAACAACT
 
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rJMFF012N16-          GGAACATGAAGTCGTCTCCCATATATGCTATGGCCATTTCATACTGTTTCATTGCCTCCT
rJMSF025F19-          GGAACATGAAGTCGTCTCCCATATATGCTATGGCCATTTCATACTGTTTCATTGCCTCCT
rJMSF007E22-          GGAACATGAAGTCGTCTCCCATATATGCTATGGCCATTTCATACTGTTTCATTGCCTCCT
                      ____________________________________________________________
consensus             GGAACATGAAGTCGTCTCCCATATATGCTATGGCCATTTCATACTGTTTCATTGCCTCCT
 
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rJMFF012N16-          CAAGTTTTTCTTCCTTGAATAAAACATTTCCATTCATCTTTCTCCTATCAGCAGCACCAA
rJMSF025F19-          CAAGTTTTTCTTCCTTGAATAAAGCATTTCCATTCATCTTTCTCCTATCAGCAGCACCAA
rJMSF007E22-          CAAGTTTTTCTTCCTTGAATAAAGCATTTCCATTCATCTTTCTCCTATCAGCAGCACCAA
JMSF025F19+                                                        TATCAGCAGCACCAA
                      ____________________________________________________________
consensus             CAAGTTTTTCTTCCTTGAATAAAGCATTTCCATTCATCTTTCTCCTATCAGCAGCACCAA
 
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rJMFF012N16-          TTCGCTCTTCTACTGTCATGTCACCTCGCGCTTTGCCTTCTTTGGTTTCATCAAAACCAA
rJMSF025F19-          TTCGCTCTTCTACTGTCATGTCACCTCGCGCTTTGCCTTCTTTGGTTTCATCAAAACCAA
rJMSF007E22-          TTCGCTCTTCTACTGTCATGTCACCTCGCGCTTTGCCTTCTTTGGTTTCATCAAAACCAA
JMSF025F19+           TTCGCTCTTCTACTGTCATGTCACCTCGCGCTTTGCCTTCTTTGGTTTCATCAAAACCAA
JMFF012N16+                                                     TGGTTTCATCAAAACCAA
                      ____________________________________________________________
consensus             TTCGCTCTTCTACTGTCATGTCACCTCGCGCTTTGCCTTCTTTGGTTTCATCAAAACCAA
 
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rJMFF012N16-          TTAATTCAACTTCATATATAACATT                                   
rJMSF025F19-          TTAATTCAACTTCATATATAACATTGGCCATGGGTGCAACATTTGGAANTGAGAAGCT  
rJMSF007E22-          TTAATTCAACTTCATATATAACATTGGCCATGGGTGCAACATTTGGAAATGAGAAGCTTC
JMSF025F19+           TTAATTCAACTTCATATATAACATTGGCCATGGGTGCAACATTTGGAAATGAGAAGCTTC
JMFF012N16+           TTAATTCAACTTCATATATAACATTGGCCATGGGTGCAACATTTGGAAATGAGAAGCTTC
                      ____________________________________________________________
consensus             TTAATTCAACTTCATATATAACATTGGCCATGGGTGCAACATTTGGAAATGAGAAGCTTC
 
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rJMSF007E22-          CATCTTTTCCATAGGCTAGTTCCCATCCGA                              
JMSF025F19+           CATCTTTTCCATAGGCTAGTTCCCATCCGACATGTAGCAATGCACGTTCACCAGATCTCA
JMFF012N16+           CATCTTTTCCATAGGCTAGTTCCCATCCGACATGTAGCAATGCACGTTCACCAGATCTCA
                      ____________________________________________________________
consensus             CATCTTTTCCATAGGCTAGTTCCCATCCGACATGTAGCAATGCACGTTCACCAGATCTCA
 
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JMSF025F19+           TGCCAGAAATGCCAATAGCTAGCCCAGTCATTTCCTTTTTCTCTTTTCCAATTACCAACT
JMFF012N16+           TGCCAGAAATGCCAATAGCTAGCCCAGTCATTTCCTTTTTCTCTTTTCCAATTACCAACT
                      ____________________________________________________________
consensus             TGCCAGAAATGCCAATAGCTAGCCCAGTCATTTCCTTTTTCTCTTTTCCAATTACCAACT
 
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JMSF025F19+           CAAGGGGTTGTTGTTCATGCCATGTGTCTTCAAACTTGTGTTGGGTGCTTTCTGCCCATG
JMFF012N16+           CAAGGGGTTGTTGTTCATGCCATGTGTCTTCAAACTTGTGTTGGGTGCTTTCTGCCCATG
                      ____________________________________________________________
consensus             CAAGGGGTTGTTGTTCATGCCATGTGTCTTCAAACTTGTGTTGGGTGCTTTCTGCCCATG
 
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JMSF025F19+           CCCTATAATGCAAAAAGCATGTTGCATATTTTGATGGCTTCTGACCATGGCCCTCTTTAA
JMFF012N16+           CCCTATAATGCAAAAAGCATGTTGCATATTTTGATGGCTTCTGACCATGGCCCTCTTTAA
                      ____________________________________________________________
consensus             CCCTATAATGCAAAAAGCATGTTGCATATTTTGATGGCTTCTGACCATGGCCCTCTTTAA
 
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JMSF025F19+           TAATTTGCTTTGTTACTTTCTCGTGGAGAACTTCCATTGCTGAATCAACTTTTGGTGGAC
JMFF012N16+           TAATTTGCTTTGTTACTTTCTCGTGGAGAACTTCCATTGCTGAATCAACTTTTGGTGGAC
JMSF007E22+               TTGCTTTGTTACTTTCTCGTGGAGAACTTCCATTGCTGAATCAACTTTTGGTGGAC
                      ____________________________________________________________
consensus             TAATTTGCTTTGTTACTTTCTCGTGGAGAACTTCCATTGCTGAATCAACTTTTGGTGGAC
 
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JMSF025F19+           CATCATCTTGAGGGAGCTCTCCATGAACAACTGAAGTTCCTTCAGTGATGATTTCATCAA
JMFF012N16+           CATCATCTTGAGGGAGCTCTCCATGAACAACTGAAGTTCCTTCAGTGATGATTTCATCAA
JMSF007E22+           CATCATCTTGAGGGAGCTCTCCATGAACAACTGAAGTTCCTTCAGTGATGATTTCATCAA
                      ____________________________________________________________
consensus             CATCATCTTGAGGGAGCTCTCCATGAACAACTGAAGTTCCTTCAGTGATGATTTCATCAA
 
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JMSF025F19+           CAGCATTTTGATCAATCTGCGAGGTCTGTTGCTGCTTATGTTCCTCCTCTACAACAGCCA
JMFF012N16+           CAGCATTTTGATCAATCTGCGAGGTCTGTTGCTGCTTATGTTCCTCCTCTACAACAGCCA
JMSF007E22+           CAGCATTTTGATCAATCTGCGAGGTCTGTTGCTGCTTATGTTCCTCCTCTACAACAGCCA
                      ____________________________________________________________
consensus             CAGCATTTTGATCAATCTGCGAGGTCTGTTGCTGCTTATGTTCCTCCTCTACAACAGCCA
 
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JMSF025F19+           TTATTCAAATTTCCTGACCTTTTGCCCTCCCGGTGCGGTTTTCAGCTAACCAGTCAACAA
JMFF012N16+           TTATTCAAATTTCCTGACCTTTTGCCCCCCCGGTGCGGTTTTCAGCTAACCAGTCAACAA
JMSF007E22+           TTATTCAAATTTCCTGACCTTTTGCCCTCCCGGTGCGGTTTTCAGCTAACCAGTCAACAA
                      ____________________________________________________________
consensus             TTATTCAAATTTCCTGACCTTTTGCCCTCCCGGTGCGGTTTTCAGCTAACCAGTCAACAA
 
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JMSF025F19+           C                                                           
JMFF012N16+           C                                                           
JMSF007E22+           CTCTGCCAAATTGCCAGACGTCACGGAGAGAGCGTCGCCAAGCTAAGCAGTGAGAGAAGA
                      ____________________________________________________________
consensus             CTCTGCCAAATTGCCAGACGTCACGGAGAGAGCGTCGCCAAGCTAAGCAGTGAGAGAAGA
 
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JMSF007E22+           GAGAGCTTCGGTCGTCGCCGTTGCCGAGCAGCCAAAATCGCAGTTTCGCTTAACGGTGCC
                      ____________________________________________________________
consensus             GAGAGCTTCGGTCGTCGCCGTTGCCGAGCAGCCAAAATCGCAGTTTCGCTTAACGGTGCC