Contig 006390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006L19Sequence308006390 (3)
JMSF014F14Sequence512006390 (3)ref|XP_009764762.1|4e-26PREDICTED: protein VAC14 homolog [Nicotiana sylvestris]813001319 (2)ref|XP_009797957.1|1e-39PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]
JMSF017M08Sequence484006390 (3)ref|XP_006355062.1|2e-16PREDICTED: protein VAC14 homolog [Solanum tuberosum]768001319 (2)ref|XP_009797957.1|4e-38PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF014F14+                                                               TTCCGGTG
                      ____________________________________________________________
consensus                                                                 TTCCGGTG
 
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JMSF014F14+           ATTTGCTTGGGGAGAGTAGGTAAACTCATGGGTCAACAAATGGATCACGGCATTAATCTT
JMSF017M08+                                                AAATGGATCACGGCATTAATCTT
                      ____________________________________________________________
consensus             ATTTGCTTGGGGAGAGTAGGTAAACTCATGGGTCAACAAATGGATCACGGCATTAATCTT
 
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JMSF014F14+           GTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCACCTCGAGAGCCGCATT
JMSF017M08+           GTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCACCTCGAGAGCCGCATT
                      ____________________________________________________________
consensus             GTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCACCTCGAGAGCCGCATT
 
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JMSF014F14+           CTTGCGCTTCTCGTAGAGCTTATCGGAGATGCTCCTCAGAACCACAGACGGGATCACAGA
JMSF017M08+           CTTGCGCTTCTCGTAGAGCTTATCGGAGATGCTCCTCAGAACCACAGACGGGATCACAGA
                      ____________________________________________________________
consensus             CTTGCGCTTCTCGTAGAGCTTATCGGAGATGCTCCTCAGAACCACAGACGGGATCACAGA
 
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JMSF014F14+           CGACGCCTTCGCAGTGGACATAGCCCCCCAAAAAAATGCCTACAAAACCCTAGAGAGAAA
JMSF017M08+           CGACGCCTTCGCAGTGGACATAGCCCCCCAAAAAAATGCCTACAAAACCCTAGAGAGAAA
                      ____________________________________________________________
consensus             CGACGCCTTCGCAGTGGACATAGCCCCCCAAAAAAATGCCTACAAAACCCTAGAGAGAAA
 
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JMSF014F14+           ATCAAATCCGCTTCCTGATCTTCTCTTGCAGGAACCGAAACATCCCTTCGTCCCCAATCT
JMSF017M08+           ATCAAATCCGCTTCCTGATCTTCTCTTGCAGGAACCGAAACATCCCTTCGTCCCCAATCT
JMSF006L19+                                                               CCCAATCT
                      ____________________________________________________________
consensus             ATCAAATCCGCTTCCTGATCTTCTCTTGCAGGAACCGAAACATCCCTTCGTCCCCAATCT
 
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JMSF014F14+           ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
JMSF017M08+           ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
JMSF006L19+           ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
                      ____________________________________________________________
consensus             ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
 
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JMSF014F14+           TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
JMSF017M08+           TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
JMSF006L19+           TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
                      ____________________________________________________________
consensus             TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
 
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JMSF014F14+           ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
JMSF017M08+           ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
JMSF006L19+           ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
                      ____________________________________________________________
consensus             ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
 
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JMSF014F14+           AAGAACAGTGCGCGATTTTTCTC                                     
JMSF017M08+           AAGAACAGTGCGCGATTTTTCTCAAGGTACGAGAAG                        
JMSF006L19+           AAGAACAGTGCGCGATTTTTCTCAAGGTACGAGAAGTCGCAGAAGAGGCTGCTGCGTTCT
                      ____________________________________________________________
consensus             AAGAACAGTGCGCGATTTTTCTCAAGGTACGAGAAGTCGCAGAAGAGGCTGCTGCGTTCT
 
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JMSF006L19+           CTCTAACGGTTCAAAACTTTGATGGCCAGCGACGGCGTGACATGTGAAGCTGTAACCTAA
                      ____________________________________________________________
consensus             CTCTAACGGTTCAAAACTTTGATGGCCAGCGACGGCGTGACATGTGAAGCTGTAACCTAA