Contig 006388:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF022A12-                                                                GTTTTG
                      ____________________________________________________________
consensus                                                                   GTTTTG
 
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rJMSF022A12-          TAATTGACACAATAGATTCAAAGTGCTTAATTAGCTTATTGGTTTACGTCTTGAAGCTTG
                      ____________________________________________________________
consensus             TAATTGACACAATAGATTCAAAGTGCTTAATTAGCTTATTGGTTTACGTCTTGAAGCTTG
 
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rJMSF022A12-          CCATCGTAATTGAAACCAATTCTTGGTTTCCCCATGCTGAAGTTGAGGACTCTTGCATCC
JMSF022A12+                                    GTTTCCCCATGCTGAAGTTGAGGACTCTTGCATCC
                      ____________________________________________________________
consensus             CCATCGTAATTGAAACCAATTCTTGGTTTCCCCATGCTGAAGTTGAGGACTCTTGCATCC
 
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rJMSF022A12-          ATGTTGTATTGGATTTCTCCGGCATAAAGAAGCCTTCTGATGTAGTGCTCTATATCAGAA
JMSF022A12+           ATGTTGTATTGGATTTCTCCGGCATAAAGAAGCCTTCTGATGTAGTGCTCTATATCAGAA
                      ____________________________________________________________
consensus             ATGTTGTATTGGATTTCTCCGGCATAAAGAAGCCTTCTGATGTAGTGCTCTATATCAGAA
 
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rJMSF022A12-          CCAATCAGCCGAAGCGTGTATTCTGTCAAAGGCGCTCCCTCATAATGATCAACAAGTTCT
JMSF022A12+           CCAATCAGCCGAAGCGTGTATTCTGTCAAAGGCGCTCCCTCATAATGATCAACAAGTTCT
                      ____________________________________________________________
consensus             CCAATCAGCCGAAGCGTGTATTCTGTCAAAGGCGCTCCCTCATAATGATCAACAAGTTCT
 
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rJMSF022A12-          TGGAAGTAAGAGTAGACTTTGTTGCAAGTCTCATCCGTCCAAAGGAACTCATCAGTTGGG
JMSF022A12+           TGGAAGTAAGAGTAGACTTTGTTGCAAGTCTCATCCGTCCAAAGGAACTCATCAGTTGGG
                      ____________________________________________________________
consensus             TGGAAGTAAGAGTAGACTTTGTTGCAAGTCTCATCCGTCCAAAGGAACTCATCAGTTGGG
 
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rJMSF022A12-          TCAAGTATGAGGGTGAGCTTGTCCATCTGCGTCTGGTCGAACGCGCACGTGTCGGGATCG
JMSF022A12+           TCAAGTATGAGGGTGAGCTTGTCCATCTGCGTCTGGTCGAACGCGCACGTGTCGGGATCG
                      ____________________________________________________________
consensus             TCAAGTATGAGGGTGAGCTTGTCCATCTGCGTCTGGTCGAACGCGCACGTGTCGGGATCG
 
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rJMSF022A12-          ATATACGCCGCGAATATCCGCACGTGCCGAGTCGTGCTGCTCAGCCACTGCCCTCCGTAC
JMSF022A12+           ATATACGCCGCGAATATCCGCACGTGCCGAGTCGTGCTGCTCAGCCACTGCCCTCCGTAC
                      ____________________________________________________________
consensus             ATATACGCCGCGAATATCCGCACGTGCCGAGTCGTGCTGCTCAGCCACTGCCCTCCGTAC
 
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rJMSF022A12-          TCTCTCCCCATGTTCCTGTTCTTCACATTTATCTGCGCCTCCACTGGCCTCAACGGAGTC
JMSF022A12+           TCTCTCCCCATGTTCCTGTTCTTCACATTTATCTGCGCCTCCACTGGCCTCAACGGAGTC
JMSF006I19+                                           CTGCGCCTCCACTGGCCTCAACGGAGTC
                      ____________________________________________________________
consensus             TCTCTCCCCATGTTCCTGTTCTTCACATTTATCTGCGCCTCCACTGGCCTCAACGGAGTC
 
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rJMSF022A12-          TTCATTCCTTCCTCAAGCTTCTTCTGCGGCTCTTGTGCTTGATTGATATCTTCTTCAACT
JMSF022A12+           TTCATTCCTTCCTCAAGCTTCTTCTGCGGCTCTTGTGCTTGATTGATATCTTCTTCAACT
JMSF006I19+           TTCATTCCTTCCTCAAGCTTCTTCTGCGGCTATTGTGCTTGATTGATATCTTCTTCAACT
                      ____________________________________________________________
consensus             TTCATTCCTTCCTCAAGCTTCTTCTGCGGCTCTTGTGCTTGATTGATATCTTCTTCAACT
 
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rJMSF022A12-          TTGACCTCTGCAGAAGCTTCTTCTTGTTCTTCTTCTACTCCTGATGATGATGATGATGAT
JMSF022A12+           TTGACCTCTGCAGAAGCTTCTTCTTGTTCTTCTTCTACTCCTGATGATGATGATGATGAT
JMSF006I19+           TTGACCTCTGCAGAAGCTTCTTCTTGTTCTTCTTCTACTCCTGATGATGATGATGATGAT
                      ____________________________________________________________
consensus             TTGACCTCTGCAGAAGCTTCTTCTTGTTCTTCTTCTACTCCTGATGATGATGATGATGAT
 
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rJMSF022A12-          GCCGATACTGTAAAACCAATTCTCTTTCTCATATTAGAGGCCTTTGACCAGCCGCCCATC
JMSF022A12+           GCCGATACTGTAAAACCAATTCTCTTTCTCATATTAGAGGCCTTTGACCAGCCGCCCATC
JMSF006I19+           GCCGATACTGTAAAACCAATTCTCTTTCTCATATTAGAGGCCTTTGACCAGCCGCCCATC
                      ____________________________________________________________
consensus             GCCGATACTGTAAAACCAATTCTCTTTCTCATATTAGAGGCCTTTGACCAGCCGCCCATC
 
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rJMSF022A12-          ATGGAGAGGGTGGGTCGGGCCATGTAGGATGAAGCTGTTGCCATGGCTAAACAAATTTCT
JMSF022A12+           ATGGAGAGGGTGGGTCGGGCCATGTAGGATGAAGCTGTTGCCATGGCTAAACAAATTTCT
JMSF006I19+           ATGGAGAGGGTGGGTCGGGCCATGTAGGATGAAGCTGTTGCCATGGCTAAACAAATTTCT
                      ____________________________________________________________
consensus             ATGGAGAGGGTGGGTCGGGCCATGTAGGATGAAGCTGTTGCCATGGCTAAACAAATTTCT
 
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rJMSF022A12-          TTTTTGCTTTCCTTAATTTCCC                                      
JMSF022A12+           TTTTTGCTTTCCTTAATTTCCC                                      
JMSF006I19+           TTTTTGCTTTCCTTAATTTCCCAGTGGTTAGTTATGTCTCAGAGCGATATGTATAGCTTC
                      ____________________________________________________________
consensus             TTTTTGCTTTCCTTAATTTCCCAGTGGTTAGTTATGTCTCAGAGCGATATGTATAGCTTC