Contig 006382:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS039D10Sequence603006382 (4)ref|XP_009766201.1|2e-64PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]
JMSF003M23Sequence357006382 (4)ref|XP_009766201.1|2e-26PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]758011241 (2)
JMSF005M21Sequence319006382 (4)ref|XP_009766201.1|3e-23PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]373011241 (2)
JMSF041I24Sequence668006382 (4)ref|XP_009766201.1|2e-67PREDICTED: FRIGIDA-like protein 4a [Nicotiana sylvestris]620012498 (2)ref|XP_009590839.1|3e-34PREDICTED: zinc finger protein CONSTANS-LIKE 16-like [Nicotiana tomentosiformis

Alignment

This contig is upended


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JMSF041I24+                                                           CCTTTAAAGTCT
                      ____________________________________________________________
consensus                                                             CCTTTAAAGTCT
 
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JMFS039D10+                                  TTGATTGGTACCACAGACTGAATTAACATGCCACATG
JMSF041I24+           TCGCCACAACACCACCTCCCTCCTTGATTGGTACCACAGACTGAATTAACATGCCACATG
                      ____________________________________________________________
consensus             TCGCCACAACACCACCTCCCTCCTTGATTGGTACCACAGACTGAATTAACATGCCACATG
 
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JMFS039D10+           CTCGCCTCCTATCTGCCATTCCAGACTTCCCCTCTACCTTCATCCTCACATAGTCCTCAG
JMSF041I24+           CTCGCCTCCTATCTGCCATTCCAGACTTCCCCTCTACCTTCATCCTCACATAGTCCTCAG
                      ____________________________________________________________
consensus             CTCGCCTCCTATCTGCCATTCCAGACTTCCCCTCTACCTTCATCCTCACATAGTCCTCAG
 
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JMFS039D10+           CAGCATCCAAAACCAACCTCATGGCGTCGACTGATTCTTTGACAGCATTAGGAATCTCAG
JMSF041I24+           CAGCATCCAAAACCAACCTCATGGCGTCGACTGATTCTTTGACAGCATTAGGAATCTCAG
                      ____________________________________________________________
consensus             CAGCATCCAAAACCAACCTCATGGCGTCGACTGATTCTTTGACAGCATTAGGAATCTCAG
 
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JMFS039D10+           ATCGCAAAGCAGCGGAATCCCTCCGGTTCTGGAAAAGAAACTTCATGAGCCCACTGGCGT
JMSF041I24+           ATCGCAAAGCAGCGGAATCCCTCCGGTTCTGGAAAAGAAACTTCATGAGCCCACTGGCGT
                      ____________________________________________________________
consensus             ATCGCAAAGCAGCGGAATCCCTCCGGTTCTGGAAAAGAAACTTCATGAGCCCACTGGCGT
 
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JMFS039D10+           CCATTCTTCTGCAGTAGAATCTCATCATCTCCGGCAAGCTCTTCTCCTTCAAATTCCCCG
JMSF003M23+                                                    TTCTCCTTCAAATTCCCCG
JMSF041I24+           CCATTCTTCTGCAGTAGAATCTCATCATCTCCGGCAAGCTCTTCTCCTTCAAATTCCCCG
                      ____________________________________________________________
consensus             CCATTCTTCTGCAGTAGAATCTCATCATCTCCGGCAAGCTCTTCTCCTTCAAATTCCCCG
 
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JMFS039D10+           CCGTATCGGGGCTCTCGATCTCCGCAATCGCCGCCGCCTTGAGCACCTCGACCCGGGCTG
JMSF003M23+           CCGTATCGGGGCTCTCGATCTCCGCAATCGCCGCCGCCTTGAGCACCTCGACCCGGGCTG
JMSF041I24+           CCGTATCGGGGCTCTCGATCTCCGCAATCGCCGCCGCCTTGAGCACCTCGACCCGGGCTG
JMSF005M21+                                                    AGCACCTCGACCCGGGCTG
                      ____________________________________________________________
consensus             CCGTATCGGGGCTCTCGATCTCCGCAATCGCCGCCGCCTTGAGCACCTCGACCCGGGCTG
 
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JMFS039D10+           CGATGGAAATCTCGCGTTCCGGGAAGCCATCCTCGCGATTCCTGAGGTCGGTGAGGGCAT
JMSF003M23+           CGATGGAAATCTCGCGTTCCGGGAAGCCATCCTCGCGATTCCTGAGGTCGGTGAGGGCAT
JMSF041I24+           CGATGGAAATCTCGCGTTCCGGGAAGCCATCCTCGCGATTCCTGAGGTCGGTGAGGGCAT
JMSF005M21+           CGATGGAAATCTCGCGTTCCGGGAAGCCATCCTCGCGATTCCTGAGGTCGGTGAGGGCAT
                      ____________________________________________________________
consensus             CGATGGAAATCTCGCGTTCCGGGAAGCCATCCTCGCGATTCCTGAGGTCGGTGAGGGCAT
 
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JMFS039D10+           TATTGGTATTCTGCCGCAAGGAGCTGAACCGAGCGTCGAGGGTTTCGGATTTTCGGGAGA
JMSF003M23+           TATTGGTATTCTGCCGCAAGGAGCTGAACCGAGCGTCGAGGGTTTCGGATTTTCGGGAGA
JMSF041I24+           TATTGGTATTCTGCCGCAAGGAGCTGAACCGAGCGTCGAGGGTTTCGGATTTTCGGGAGA
JMSF005M21+           TATTGGTATTCTGCCGCAAGGAGCTGAACCGAGCGTCGAGGGTTTCGGATTTTCGGGAGA
                      ____________________________________________________________
consensus             TATTGGTATTCTGCCGCAAGGAGCTGAACCGAGCGTCGAGGGTTTCGGATTTTCGGGAGA
 
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JMFS039D10+           GAGCTCGGTCGACGGCGGAGAAATGGGATGTTAGGGTTTTGTGGATGTCGGCGATGGTAG
JMSF003M23+           GAGCTCGGTCGACGGCGGAGAAATGGGATGTTAGGGTTTTGTGGATGTCGGCGATGGTAG
JMSF041I24+           GAGCTCGGTCGACGGCGGAGAAATGGGATGTTAGGGTTTTGTGGATGTCGGCGATGGTAG
JMSF005M21+           GAGCTCGGTCGACGGCGGAGAAATGGGATGTTAGGGTTTTGTGGATGTCGGCGATGGTAG
                      ____________________________________________________________
consensus             GAGCTCGGTCGACGGCGGAGAAATGGGATGTTAGGGTTTTGTGGATGTCGGCGATGGTAG
 
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JMFS039D10+           ATAGTAGAGCTTTACGAGCCTCGAGCTTGGAGAAGAAGGATTGGATCGGTTCCGGGTTGA
JMSF003M23+           ATAGTAGAGCTTTACGAGCCTCGAGCTTGGAGAAGAAGGATTGGATCGGTTCCGGGTTGA
JMSF041I24+           ATAGTAGAGCTTTACGAGCCTCGAGCTTGGAGAAGAAGGATTGGATCGGTTCCGGGTTGA
JMSF005M21+           ATAGTAGAGCTTTACGAGCCTCGAGCTTGGAGAAGAAGGATTGGATCGGTTCCGGGTTGA
                      ____________________________________________________________
consensus             ATAGTAGAGCTTTACGAGCCTCGAGCTTGGAGAAGAAGGATTGGATCGGTTCCGGGTTGA
 
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JMFS039D10+           TTGAGATTTCGGTAGCCATGGCAATA                                  
JMSF003M23+           TTGAGATTTCGGTAGCCATGGCAATAGAGACTCCGGC                       
JMSF041I24+           TTGAGATTTCGGTAGCCATGGCAATAGAGACTCCGGCGAGTGTTTCAGTTCATCT     
JMSF005M21+           TTGAGATTTCGGTAGCCATGGCAATAGAGACTCCGGCGAGTGTTTCAGTTCATCTAAATC
                      ____________________________________________________________
consensus             TTGAGATTTCGGTAGCCATGGCAATAGAGACTCCGGCGAGTGTTTCAGTTCATCTAAATC