Contig 006376:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005H22Sequence379006376 (3)ref|XP_006358491.1|1e-27PREDICTED: uncharacterized protein LOC102596358 isoform X2 [Solanum tuberosum]
JMSF025E07Sequence692006376 (3)ref|XP_006358491.1|2e-66PREDICTED: uncharacterized protein LOC102596358 isoform X2 [Solanum tuberosum]
JMSF043D07Sequence731006376 (3)ref|XP_006358490.1|4e-72PREDICTED: uncharacterized protein LOC102596358 isoform X1 [Solanum tuberosum]681016179ref|XP_009603527.1|2e-43PREDICTED: nuclear pore complex protein NUP160 homolog isoform X2 [Nicotiana to

Alignment

This contig is upended


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JMSF043D07+                                                            CACTGCAGCAA
                      ____________________________________________________________
consensus                                                              CACTGCAGCAA
 
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JMSF043D07+           CTGTCCTGCTCCTGGACATTATGCCCCATAAACGACCAAAGCCAGCATCATCACGAAGCT
JMSF025E07+                                       TAAACGACCAAAGCCAGCATCATCACGAAGCT
                      ____________________________________________________________
consensus             CTGTCCTGCTCCTGGACATTATGCCCCATAAACGACCAAAGCCAGCATCATCACGAAGCT
 
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JMSF043D07+           CATATACAAAACCTGGAGCACTAGGTTCGACCACGCCAAGTTGGAAACAGCTGACAGATC
JMSF025E07+           CATATACAAAACCTGGAGCACTAGGTTCGACCACGCCAAGTTGGAAACAGCTGACAGATC
                      ____________________________________________________________
consensus             CATATACAAAACCTGGAGCACTAGGTTCGACCACGCCAAGTTGGAAACAGCTGACAGATC
 
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JMSF043D07+           CATCATTCCTGCCAACTACTATAGACCCTGCTGTTGCTGCGACTGCCGTTATTGCTCCAT
JMSF025E07+           CATCATTCCTGCCAACTACTATAGACCCTGCTGTTGCTGCGACTGCCGTTATTGCTCCAT
                      ____________________________________________________________
consensus             CATCATTCCTGCCAACTACTATAGACCCTGCTGTTGCTGCGACTGCCGTTATTGCTCCAT
 
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JMSF043D07+           GATGAGGATTCATTTGTGCATTGCACTCAATAACCTCACTAGATGGCAAAACAGAACTAG
JMSF025E07+           GATGAGGATTCATTTGTGCATTGCACTCAATAACCTCACTAGATGGCAAAACAGAACTAG
                      ____________________________________________________________
consensus             GATGAGGATTCATTTGTGCATTGCACTCAATAACCTCACTAGATGGCAAAACAGAACTAG
 
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JMSF043D07+           ATATATAGGTAGAAACATCTTTAAGTTTAATAAGGTAAGCAACCCCTGAGATTGTCAAAG
JMSF025E07+           ATATATAGGTAGAAACATCTTTAAGTTTAATAAGGTAAGCAACCCCTGAGATTGTCAAAG
                      ____________________________________________________________
consensus             ATATATAGGTAGAAACATCTTTAAGTTTAATAAGGTAAGCAACCCCTGAGATTGTCAAAG
 
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JMSF043D07+           CATTAAGTGTGAAATGTCCCCCAGTCAAAAGATTAGCCTGATTTTCACATATCAGAGTAA
JMSF025E07+           CATTAAGTGTGAAATGTCCCCCAGTCAAAAGATTAGCCTGATTTTCACATATCAGAGTAA
JMSF005H22+                                                    TTTTCACATATCAGAGTAA
                      ____________________________________________________________
consensus             CATTAAGTGTGAAATGTCCCCCAGTCAAAAGATTAGCCTGATTTTCACATATCAGAGTAA
 
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JMSF043D07+           AGGGAAAAAGTGCATCTGGGAATACAATCTGCAGTCCAATATTTGGAAACTCTTTATCAT
JMSF025E07+           AGGGAAAAAGTGCATCTGGGAATACAATCTGCAGTCCAATATTTGGAAACTCTTTATCAT
JMSF005H22+           AGGGAAAAAGTGCATCTGGGAATACAATCTGCAGTCCAATATTTGGAAACTCTTTATCAT
                      ____________________________________________________________
consensus             AGGGAAAAAGTGCATCTGGGAATACAATCTGCAGTCCAATATTTGGAAACTCTTTATCAT
 
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JMSF043D07+           CATTTAGCTGCATTATCTCTACAACATTTGCCTGACTCTTGTTAATTCTCCAAATTAGAT
JMSF025E07+           CATTTAGCTGCATTATCTCTACAACATTTGCCTGACTCTTGTTAATTCTCCAAATTAGAT
JMSF005H22+           CATTTAGCTGCATTATCTCTACAACATTTGCCTGACTCTTGTTAATTCTCCAAATTAGAT
                      ____________________________________________________________
consensus             CATTTAGCTGCATTATCTCTACAACATTTGCCTGACTCTTGTTAATTCTCCAAATTAGAT
 
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JMSF043D07+           AGGTGGGAGGGTTTCCAAATACGGCGTAGGAGGCGGTATCTCTGTTGAGATGGTCCGGCA
JMSF025E07+           AGGTGGGAGGGTTTCCAAATACGGCGTAGGAGGCGGTATCTCTGTTGAGATGGTCCGGCA
JMSF005H22+           AGGTGGGAGGGTTTCCAAATACGGCGTAGGAGGCGGTATCTCTGTTGAGATGGTCCGGCA
                      ____________________________________________________________
consensus             AGGTGGGAGGGTTTCCAAATACGGCGTAGGAGGCGGTATCTCTGTTGAGATGGTCCGGCA
 
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JMSF043D07+           GCACGGCGGCGGCCTCGGCCGGAGTAGAAGCAGACGAAGGAACTGATAGCTGAATCCATT
JMSF025E07+           GCACGGCGGCGGCCTCGGCCGGAGTAGAAGCAGACGAAGGAANTGATAGCTGAATCCATT
JMSF005H22+           GCACGGCGGCGGCCTCGGCCGGAGTAGAAGCAGACGAAGGAACTGATAGCTGAATCCATT
                      ____________________________________________________________
consensus             GCACGGCGGCGGCCTCGGCCGGAGTAGAAGCAGACGAAGGAACTGATAGCTGAATCCATT
 
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JMSF043D07+           TGATGGCGTCACTGCCGATTATAGGAACTTCCATTCCGGCCAAACACGACCTGCCCCCCA
JMSF025E07+           TGATGGCGTCACTGCCGATTATAGGAACTTCCATTCCGGCCAAACACGACCTGCTCCCCA
JMSF005H22+           TGATGGCGTCACTGCCGATTATAGGAACTTCCATTCCGGCCAAACACGACCTGCTCCCCA
                      ____________________________________________________________
consensus             TGATGGCGTCACTGCCGATTATAGGAACTTCCATTCCGGCCAAACACGACCTGCTCCCCA
 
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JMSF043D07+           TTTTCACTCCCCAGAATACAAATCACATTTAGGTTTCAACAGGTTGAGGAAGAAAGAGCC
JMSF025E07+           TTTTCACTCCCCAGAATACAAATCACATTTAGGTTTCAACAGGTTGAGGAAGAAAGAGCC
JMSF005H22+           TTTTCACTCCCCAGAATACAAATCACATTTAGGTTTCAACAGGTTGAGGAAGAAAGAGCC
                      ____________________________________________________________
consensus             TTTTCACTCCCCAGAATACAAATCACATTTAGGTTTCAACAGGTTGAGGAAGAAAGAGCC