Contig 006371:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003D01Sequence360006371 (3)757013877 (3)emb|CDP02820.1|1e-38unnamed protein product [Coffea canephora]
JMSF004N22Sequence316006371 (3)373013877 (3)
JMSF016K04Sequence525006371 (3)775013877 (3)ref|XP_011101141.1|1e-60PREDICTED: splicing factor U2af large subunit B isoform X2 [Sesamum indicum]

Alignment

This contig is upended


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JMSF016K04+                          TNAGATCTATCTTTGGAGCGAGATCTGGACCTACGTTTGTGTCTA
                      ____________________________________________________________
consensus                            TNAGATCTATCTTTGGAGCGAGATCTGGACCTACGTTTGTGTCTA
 
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JMSF016K04+           TCCTCTCTATCTCNGTCGTAATCCCGTCGCCTGTCTCTGTCACGACCTCTGTAGTTACCA
                      ____________________________________________________________
consensus             TCCTCTCTATCTCNGTCGTAATCCCGTCGCCTGTCTCTGTCACGACCTCTGTAGTTACCA
 
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JMSF016K04+           TCATCTTCTCTATCTCTAGTCCTCTCCCTCTCCCTTCTTTCACCTCGATCCCTATTGCGG
                      ____________________________________________________________
consensus             TCATCTTCTCTATCTCTAGTCCTCTCCCTCTCCCTTCTTTCACCTCGATCCCTATTGCGG
 
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JMSF003D01+           TCTCTGTGGTGGCGATCAATGTACTTTTCCCTGTCCCTGTCTCTCCCTCTATCTTGATCT
JMSF016K04+           TCTCTGTGGTGGCGATCAATGTACTTTTCCCTGTCCCTGTCTCTCCCTCTATCTTGATCT
JMSF004N22+                                                       CCCTCTATCTTGATCT
                      ____________________________________________________________
consensus             TCTCTGTGGTGGCGATCAATGTACTTTTCCCTGTCCCTGTCTCTCCCTCTATCTTGATCT
 
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JMSF003D01+           CTATCACGGTCCCGATCTCGCCCTTTTTCCCTTTCCTTGTCCTTGCTTCTAGACGATTCT
JMSF016K04+           CTATCACGGTCCCGATCTCGCCCTTTTTCCCTTTCCTTGTCCTTGCTTCTAGACGATTCT
JMSF004N22+           CTATCACGGTCCCGATCTCGCCCTTTTTCCCTTTCCTTGTCCTTGCTTCTAGACGATTCT
                      ____________________________________________________________
consensus             CTATCACGGTCCCGATCTCGCCCTTTTTCCCTTTCCTTGTCCTTGCTTCTAGACGATTCT
 
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JMSF003D01+           CTTTCTTTCTCATAGTCACGTGAACTATGCTGAGACTTGGAGTCGCTGTGTTCTTCGGCG
JMSF016K04+           CTTTCTTTCTCATAGTCACGTGAACTATGCTGAGACTTGGAGTCGCTGTGTTCTTCGGCG
JMSF004N22+           CTTTCTTTCTCATAGTCACGTGAACTATGCTGAGACTNGGAGTCGCTGTGTTCTTCGGCG
                      ____________________________________________________________
consensus             CTTTCTTTCTCATAGTCACGTGAACTATGCTGAGACTTGGAGTCGCTGTGTTCTTCGGCG
 
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JMSF003D01+           CCACCGTAGAAGGCGGCGGTTTTGGGCTGAGGCGAAGCTCCGTAATTGTCTCTATTGTGG
JMSF016K04+           CCACCGTAGAAGGCGGCGGTTTTGGGCTGAGGCGAAGCTCCGTAATTGTCTCTATTGTGG
JMSF004N22+           CCACCGTAGAAGGCGGCGGTTTTGGGCTGAGGCGAAGCTCCGTAATTGTCTCTATTGTGG
                      ____________________________________________________________
consensus             CCACCGTAGAAGGCGGCGGTTTTGGGCTGAGGCGAAGCTCCGTAATTGTCTCTATTGTGG
 
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JMSF003D01+           CCTACATCCTCTCCATTGCCGTCATAGTCTGTCATCTTTTACTGTTCCTGCGCCTTTCAC
JMSF016K04+           CCTACATCCTCTCCATTGCCGTCATAGTCTGTCATCTTTTACTGTTCCTGCGCCTTTCAC
JMSF004N22+           CCTACATCCTCTCCATTGCCGTCATAGTCTGTCATCTTTTACTGTTCCTGCGCCTTTCAC
                      ____________________________________________________________
consensus             CCTACATCCTCTCCATTGCCGTCATAGTCTGTCATCTTTTACTGTTCCTGCGCCTTTCAC
 
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JMSF003D01+           TCCCCCTTCAACAGCTTTCTCTCGAGTCTAAGATGCCAAGCAACTGAGTTTGTGAAGTT 
JMSF016K04+           TCCCCCTTCAACAGCTTTCTCTCGAGTCTAAGATGCCAAGCAACTGAGTTTGTGAAGTT 
JMSF004N22+           TCCCCCTTCAACAGCTTTCTCTCGAGTCTAAGATGCCAAGCAACTGAGTTTGTGAAGTTC
                      ____________________________________________________________
consensus             TCCCCCTTCAACAGCTTTCTCTCGAGTCTAAGATGCCAAGCAACTGAGTTTGTGAAGTTC