| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012E21 | Sequence | 521 | 006368 (6) | ref|NP_001275147.1| | 6e-86 | phosphatidate cytidylyltransferase 1 [Solanum tuberosum] sp|O04940.1|CDS1_SOLTU | 755 | 001374 (6) | ref|XP_009799382.1| | 3e-111 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMFF017L24 | Sequence | 565 | 006368 (6) | ref|NP_001275147.1| | 5e-79 | phosphatidate cytidylyltransferase 1 [Solanum tuberosum] sp|O04940.1|CDS1_SOLTU | 775 | 001374 (6) | ref|XP_009799382.1| | 2e-100 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMFF022E13 | Sequence | 454 | 006368 (6) | ref|XP_009799382.1| | 3e-69 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 | 734 | 001374 (6) | ref|XP_009799382.1| | 6e-114 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMSF004J03 | Sequence | 235 | 006368 (6) | ||||||||
| JMSF015N19 | Sequence | 495 | 006368 (6) | ref|XP_009599330.1| | 2e-62 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana tomentosiformis] ref|XP | 770 | 001374 (6) | ref|XP_009799382.1| | 2e-109 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
| JMSF025J23 | Sequence | 685 | 006368 (6) | ref|NP_001275147.1| | 6e-104 | phosphatidate cytidylyltransferase 1 [Solanum tuberosum] sp|O04940.1|CDS1_SOLTU | 785 | 001374 (6) | ref|XP_009799382.1| | 4e-97 | PREDICTED: phosphatidate cytidylyltransferase [Nicotiana sylvestris] ref|XP_0097 |
This contig is upended
. : . : . : . : . : . :
JMSF025J23+ CACAATTAGANTCATATGGGTTCCATG
____________________________________________________________
consensus CACAATTAGANTCATATGGGTTCCATG
. : . : . : . : . : . :
JMSF025J23+ CATACTGGCCAAACTGATATTTGTACATCTTCTTCTTCAAAGTAAGAATGAACCACATGA
____________________________________________________________
consensus CATACTGGCCAAACTGATATTTGTACATCTTCTTCTTCAAAGTAAGAATGAACCACATGA
. : . : . : . : . : . :
JMFF012E21+ ATACAAGAAATAACAGGTGACCATGTGGTACTTGATAAATCTCCCAACAA
JMSF025J23+ AACCTGCTATATACAAGAAATAACAGGTGACCATGTGGTACTTGATAAATCTCCCAACAA
JMFF017L24+ GTGGTACTTGATAAATCTCCCAACAA
____________________________________________________________
consensus AACCTGCTATATACAAGAAATAACAGGTGACCATGTGGTACTTGATAAATCTCCCAACAA
. : . : . : . : . : . :
JMFF012E21+ GCTTATATAAGAATTTGTCTGTAGTAACAGTATTGACGAGCCTTTGGCTGAGGATGCGGC
JMSF025J23+ GCTTATATAAGAATTTGTCTGTAGTAACAGTATTGACGAGCCTTTGGCTGAGGATGCGGC
JMFF022E13+ TCTGTAGTAACAGTATTGACGAGCCTTTGGCTGAGGATGCGGC
JMFF017L24+ GCTTATATAAGAATTTGTCTGTAGTAACAGTATTGACGAGCCTTTGGCTGAGGATGCGGC
JMSF015N19+ GGCTGAGGATGCGGC
____________________________________________________________
consensus GCTTATATAAGAATTTGTCTGTAGTAACAGTATTGACGAGCCTTTGGCTGAGGATGCGGC
. : . : . : . : . : . :
JMFF012E21+ CATAAACAAAAAGCATTGCTGTGAAGAAAAAGTGCCAATTCAATAGCCTGAATCCAGGGA
JMSF025J23+ CATAAACAAAAAGCATTGCTGTGAAGAAAAAGTGCCAATTCAATAGCCTGAATCCAGGGA
JMFF022E13+ CATAAACAAAAAGCATTGCTGTGAAGAAAAAGTGCCAATTCAATAGCCTGAATCCAGGGA
JMFF017L24+ CATAAACAAAAAGCATTGCTGTGAAGAAAAAGTGCCAATTCAATAGCCTGAATCCAGGGA
JMSF015N19+ CATAAACAAAAAGCATTGCTGTGAAGAAAAAGTGCCAATTCAATAGCCTGAATCCAGGGA
____________________________________________________________
consensus CATAAACAAAAAGCATTGCTGTGAAGAAAAAGTGCCAATTCAATAGCCTGAATCCAGGGA
. : . : . : . : . : . :
JMFF012E21+ GCTGTCTGTCTTCATGTGCTCTCCGAAGTAGATTGAACAACTCTCTTGCCATGAAGATTT
JMSF025J23+ GCTGTCTGTCTTCATGTGCTCTCCGAAGTAGATTGAACAACTCTCTTGCCATGAAGATTT
JMFF022E13+ GCTGTCTGTCTTCATGTGCTCTCCGAAGTAGATTGAACAACTCTCTTGCCATGAAGATTT
JMFF017L24+ GCTGTCTGTCTTCATGTGCTCTCCGAAGTAGATTGAACAACTCTCTTGCCATGAAGATTT
JMSF015N19+ GCTGTCTGTCTTCATGTGCTCTCCGAAGTAGATTGAACAACTCTCTTGCCATGAAGATTT
____________________________________________________________
consensus GCTGTCTGTCTTCATGTGCTCTCCGAAGTAGATTGAACAACTCTCTTGCCATGAAGATTT
. : . : . : . : . : . :
JMFF012E21+ GGATAACAACAATCATGGCCCAGATATAAAGGTGACCCATGTAGATTATTAAGGCAAAAC
JMSF025J23+ GGATAACAACAATCATGGCCCAGATATAAAGGTGACCCATGTAGATTATTAAGGCAAAAC
JMFF022E13+ GGATAACAACAATCATGGCCCAGATATAAAGGTGACCCATGTAGATTATTAAGGCAAAAC
JMFF017L24+ GGATAACAACAATCATGGCCCAGATATAAAGGTGACCCATGTAGATTATTAAGGCAAAAC
JMSF015N19+ GGATAACAACAATCATGGCCCAGATATAAAGGTGACCCATGTAGATTATTAAGGCAAAAC
____________________________________________________________
consensus GGATAACAACAATCATGGCCCAGATATAAAGGTGACCCATGTAGATTATTAAGGCAAAAC
. : . : . : . : . : . :
JMFF012E21+ CACCAATCATCCAAACCGATGAATATCCCCGGATCAACATCGATTTGTACTTGTTTCGAT
JMSF025J23+ CACCAATCATCCAAACCGATGAATATCCCCGGATCAACATCGATTTGTACTTGTTTCGAT
JMFF022E13+ CACCAATCATCCAAACCGATGAATATCCCCGGATCAACATCGATTTGTACTTGTTTCGAT
JMFF017L24+ CACCAATCATCCAAACCGATGAATATCCCCGGATCAACATCGATTTGTACTTGTTTCGAT
JMSF015N19+ CACCAATCATCCAAACCGATGAATATCCCCGGATCAACATCGATTTGTACTTGTTTCGAT
____________________________________________________________
consensus CACCAATCATCCAAACCGATGAATATCCCCGGATCAACATCGATTTGTACTTGTTTCGAT
. : . : . : . : . : . :
JMFF012E21+ CATTGACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
JMSF025J23+ CATTGACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
JMFF022E13+ CATTGACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
JMFF017L24+ CATTGACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
JMSF015N19+ CATTGACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
JMSF004J03+ ACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
____________________________________________________________
consensus CATTGACAAGTAAATGATCACCATTTGCTTTAACAACCTCAGCAGGAACCTCATTCGAGC
. : . : . : . : . : . :
JMFF012E21+ CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
JMSF025J23+ CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
JMFF022E13+ CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
JMFF017L24+ CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
JMSF015N19+ CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
JMSF004J03+ CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
____________________________________________________________
consensus CTCTACGGCGACGAAACCGTCCACCAGGCCCTCCTTGGGAGCCAGGATTACTATCTTTCT
. : . : . : . : . : . :
JMFF012E21+ GCATATCTTCCGTCTTCACTTCTCCCTCCACT
JMSF025J23+ GCATATCTTCCGTCTTCACTTCTCCCTCCACT
JMFF022E13+ GCATATCTTCCGTCTTCACTTCTCCCTCCACT
JMFF017L24+ GCATATCTTCCGTCTTCACTTCTCCCTCCACT
JMSF015N19+ GCATATCTTCCGTCTTCACTTCTCCCTCCACT
JMSF004J03+ GCATATCTTCCGTCTTCACTTCTCCCTCCACTAACAAAGCAATTCACTTGCACATTAATA
____________________________________________________________
consensus GCATATCTTCCGTCTTCACTTCTCCCTCCACTAACAAAGCAATTCACTTGCACATTAATA
. : . : . : . : . : . :
JMSF004J03+ CACAGCAGTATCTCTGTGATTGAGAGAGAGACAGCAGTCTGGAGTCTGGAAGTAACCGTC
____________________________________________________________
consensus CACAGCAGTATCTCTGTGATTGAGAGAGAGACAGCAGTCTGGAGTCTGGAAGTAACCGTC