| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS058E05 | Sequence | 597 | 006367 (4) | ref|XP_008449685.1| | 6e-86 | PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Cucumis melo] | |||||
| JMFS118B12 | Sequence | 626 | 006367 (4) | ref|XP_008449685.1| | 2e-44 | PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Cucumis melo] | |||||
| JMSF004F15 | Sequence | 245 | 006367 (4) | 350 | 008523 (2) | gb|AFK36310.1| | 7e-31 | unknown [Lotus japonicus] | |||
| JMSF022J17 | Sequence | 694 | 006367 (4) | ref|XP_008449685.1| | 3e-88 | PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Cucumis melo] | 796 | 008523 (2) | emb|CBI17197.3| | 5e-122 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF022J17+ CCTCGATGAGN
____________________________________________________________
consensus CCTCGATGAGN
. : . : . : . : . : . :
JMFS058E05+ CAGGTTGAAAAACAGTGGTTCCAGATTTCACAGACTCCTCAACATCA
JMSF022J17+ TCTGCCAGAAGGCCAGGTTGAAAAACAGTGGTTCCAGATTTCACAGACTCCTCAACATCA
____________________________________________________________
consensus TCTGCCAGAAGGCCAGGTTGAAAAACAGTGGTTCCAGATTTCACAGACTCCTCAACATCA
. : . : . : . : . : . :
JMFS058E05+ ACTGATCCAATCAATCTATCTTCAGTTACACCAAGGGGAATCTGAACAAAAGGAGATTTA
JMSF022J17+ ACTGATCCAATCAATCTATCTTCAGTTACACCAAGGGGAATCTGAACAAAAGGAGATTTA
____________________________________________________________
consensus ACTGATCCAATCAATCTATCTTCAGTTACACCAAGGGGAATCTGAACAAAAGGAGATTTA
. : . : . : . : . : . :
JMFS058E05+ ATTATCTCTGTCTTAATATTACCAGCGGAGTCATACTCTACTCTATCAGCAAGTCCATCT
JMSF022J17+ ATTATCTCTGTCTTAATATTACCAGCGGAGTCATACTCTACTCTATCAGCAAGTCCATCT
____________________________________________________________
consensus ATTATCTCTGTCTTAATATTACCAGCGGAGTCATACTCTACTCTATCAGCAAGTCCATCT
. : . : . : . : . : . :
JMFS058E05+ TCCCACTCTTCAGGACAGGTAGGATCAGCATTTGAAATGGAGCCTTTAACTATTTCAATT
JMFS118B12+ ACTCTTCAGGACAGGTAGGATCAGCATTTGAAATGGAGCCTTTAACTATTTCAATT
JMSF022J17+ TCCCACTCTTCAGGACAGGTAGGATCAGCATTTGAAATGGAGCCTTTAACTATTTCAATT
____________________________________________________________
consensus TCCCACTCTTCAGGACAGGTAGGATCAGCATTTGAAATGGAGCCTTTAACTATTTCAATT
. : . : . : . : . : . :
JMFS058E05+ GGAGGCAGAACTGCATGCAATCCACGAGCCATCACAGTTTTGGCCGTCCCACGTTTTCCA
JMFS118B12+ GGAGGCAGAACTGCATGCAATCCACGAGCCATCACAGTTTTGGCCGTCCCACGTTTTCCA
JMSF022J17+ GGAGGCAGAACTGCATGCAATCCACGAGCCATCACAGTTTTGGCCGTCCCACGTTTTCCA
____________________________________________________________
consensus GGAGGCAGAACTGCATGCAATCCACGAGCCATCACAGTTTTGGCCGTCCCACGTTTTCCA
. : . : . : . : . : . :
JMFS058E05+ GATATCGCAATTCCTCCTATATTGCGGTCAATCGCCCCAAGTAGAAGAGCAGTTTTAATA
JMFS118B12+ GATATCGCAATTCCTCCTATATTGCGGTCAATCGCCCCAAGTAGAAGAGCAGTTTTAATA
JMSF022J17+ GATATCGCAATTCCTCCTATATTGCGGTCAATCGCCCCAAGTAGAAGAGCAGTTTTAATA
____________________________________________________________
consensus GATATCGCAATTCCTCCTATATTGCGGTCAATCGCCCCAAGTAGAAGAGCAGTTTTAATA
. : . : . : . : . : . :
JMFS058E05+ GCATCCTGTCCGACGACGGCAGCTAAAGGGAAGTACTGCCTGCCGTAAGCAGTGGTGTCG
JMFS118B12+ GCATCCTGTCCGACGACGGCAGCTAAAGGGAAGTACTGCCTGCCGTAAGCAGTGGTGTCG
JMSF022J17+ GCATCCTGTCCGACGACGGCAGCTAAAGGGAAGTACTGCCTGCCGTAAGCAGTGGTGTCG
____________________________________________________________
consensus GCATCCTGTCCGACGACGGCAGCTAAAGGGAAGTACTGCCTGCCGTAAGCAGTGGTGTCG
. : . : . : . : . : . :
JMFS058E05+ GCGGCGGGCTTCTGAGGCGCAGCGACGACGCTTCCGTTGGCACTGGCATTGATTCTGAAG
JMFS118B12+ GCGGCGGGCTTCTGAGGCGCAGCGACGACGCTTCCGTTGGCACTGGCATTGATTCTGAAG
JMSF022J17+ GCGGCGGGCTTCTGAGGCGCAGCGACGACGCTTCCGTTGGCACTGGCATTGATTCTGAAG
JMSF004F15+ TGAAG
____________________________________________________________
consensus GCGGCGGGCTTCTGAGGCGCAGCGACGACGCTTCCGTTGGCACTGGCATTGATTCTGAAG
. : . : . : . : . : . :
JMFS058E05+ CGAAGCCTGTGTGGTCGTCGTCCTGAAGGCCTAAGAGAAGGAGTAGAGAGAGTGGGGAGC
JMFS118B12+ CGAAGCCTGTGTGGTCGTCGTCCTGAAGGCCTAAGAGAAGGAGTAGAGAGAGTGGGGAGC
JMSF022J17+ CGAAGCCTGTGTGGTCGTCGTCCTGAAGGCCTAAGAGAAGGAGTAGAGAGAGTGGGGAGC
JMSF004F15+ CGAAGCCTGTGTGGTCGTCGTCCTGAAGGCCTAAGAGAAGGAGTAGAGAGAGTGGGGAGC
____________________________________________________________
consensus CGAAGCCTGTGTGGTCGTCGTCCTGAAGGCCTAAGAGAAGGAGTAGAGAGAGTGGGGAGC
. : . : . : . : . : . :
JMFS058E05+ AGAAACTTGAAGCGCAGAGTAGTGGAAAAGGGCGCAGTATGCGATGGATTCGCTGGTAAT
JMFS118B12+ AGAAACTTGAAGCGCAGAGTAGTGGAAAAGGGCGCAGTATGCGATGGATTCGCTGGTAAT
JMSF022J17+ AGAAACTTGAAGCGCAGAGTAGTGGAAAAGGGCGCAGTATGCGATGGATTCGCTGGTAAT
JMSF004F15+ AGAAACTTGAAGCGCAGAGTAGTGGAAAAGGGCGCAGTATGCGATGGATTCGCTGGTAAT
____________________________________________________________
consensus AGAAACTTGAAGCGCAGAGTAGTGGAAAAGGGCGCAGTATGCGATGGATTCGCTGGTAAT
. : . : . : . : . : . :
JMFS058E05+ GTAGAAGAGA
JMFS118B12+ GTAGAAGAGAGCACCATTGGGCTACTGAAATGCGGAGAAGAAAGGGAAAGAGGAGGAAAG
JMSF022J17+ GTAGAAGAGAGCACCATTGGGCTACTGAAATGCGGAGAAGAAAGGGAAAGAGGAGGAAAG
JMSF004F15+ GTAGAAGAGAGCACCATTGGGCTACTGAAATGCGGAGAAGAAAGGGAAAGAGGAGGAAAG
____________________________________________________________
consensus GTAGAAGAGAGCACCATTGGGCTACTGAAATGCGGAGAAGAAAGGGAAAGAGGAGGAAAG
. : . : . : . : . : . :
JMFS118B12+ AAGCA
JMSF022J17+ AAGCAGTGGTGATTGTTTTCT
JMSF004F15+ AAGCAGTGGTGATTGTTTTCTTATCTTGGATTTGCCAGTGTTATCGCCATTTGTCACTTC
____________________________________________________________
consensus AAGCAGTGGTGATTGTTTTCTTATCTTGGATTTGCCAGTGTTATCGCCATTTGTCACTTC