Contig 006365:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004D12Sequence225006365 (4)292019216
JMSF033I01Sequence374006365 (4)677012672 (3)emb|CDP20909.1|5e-72unnamed protein product [Coffea canephora]
JMSF037A17Sequence300006365 (4)703012672 (3)emb|CDP20909.1|2e-72unnamed protein product [Coffea canephora]
JMSF040K21Sequence418006365 (4)743012672 (3)emb|CDP20909.1|8e-103unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF040K21+ AG
                      ____________________________________________________________
consensus AG
 
. : . : . : . : . : . :
JMSF033I01+ TGAGGAGCTNGAAGGCCCNGA
JMSF040K21+ CCCGGGGGTNGATTTCCCCTCCAGATGGGCTCTNTNGGCTGAGGAGCTAGAAGGCCCNGA
                      ____________________________________________________________
consensus CCCGGGGGTNGATTTCCCCTCCAGATGGGCTCTNTNGGCTGAGGAGCTAGAAGGCCCNGA
 
. : . : . : . : . : . :
JMSF033I01+ TGGTATAGAGATTGCTGCNTCNATGCTTGTTGCTGTTTCNACCTTTGCTGCTGCNTTTTT
JMSF040K21+ TGGTATAGAGATTGCTGCNTCNATGCTTGTTGCTGTTTCNACCTTTGNTGNTGCNTTTTT
                      ____________________________________________________________
consensus TGGTATAGAGATTGCTGCNTCNATGCTTGTTGCTGTTTCNACCTTTGCTGCTGCNTTTTT
 
. : . : . : . : . : . :
JMSF033I01+ TGCTTNTTTATNTTNGGATATATNTNCCCCCCCNGNGGTGTNTNTAGAGGTAATTGTNTN
JMSF040K21+ TGCTTNTTTATNTTTGGANATATNTNCCCCCCCNGAGGTGTNTNTAGAGGTAATTGTNTA
JMSF037A17+ CCCCCCCNGAGGTGTNTCTAGAGGTAATTGTNTN
                      ____________________________________________________________
consensus TGCTTNTTTATNTTTGGATATATNTNCCCCCCCNGAGGTGTNTCTAGAGGTAATTGTNTA
 
. : . : . : . : . : . :
JMSF033I01+ TNGNGAGAGGGNCNGATNAAACGATAGNTTGAAGGTTNATTTTNGGGTTTGAAAAAAGGG
JMSF040K21+ TNGNGAGAGGGNCCGNTNAAACGATAGNTTGAAGGTTNATTTTNGGGTTTGAAAAAAGGG
JMSF037A17+ TNGAGAGAGGGACCGATNAAACGATNGNTTGAAGGTTAATTTTNGGGTTTGAAAAAAGGG
JMSF004D12+ AAACGATAGATTGAAGGTTNATTTTNGGGTTTGAAAAAAGGG
                      ____________________________________________________________
consensus TNGAGAGAGGGACCGATNAAACGATAGATTGAAGGTTAATTTTNGGGTTTGAAAAAAGGG
 
. : . : . : . : . : . :
JMSF033I01+ GGGAAAACNGGAAGNAGNAACGAAAAATTATCNAAGTNAAAGNAAAAAAATTAAATNAAA
JMSF040K21+ GGGAAAACGGGAAGAAGAAACGNAAAATTATCCAAGTNAAAGNAAAAAAATTAAATNAAA
JMSF037A17+ GGGAAAACGGGAAGAAGAAACGAAAAATNATCNAAGTTAAAGNAAAAAAATNAAATNAAA
JMSF004D12+ GGGAAAACNGGAAGNAGNAACGNAAAATTATCCAAGTTAAAGNAAAAAAATTAAATTAAA
                      ____________________________________________________________
consensus GGGAAAACGGGAAGAAGAAACGAAAAATTATCCAAGTTAAAGNAAAAAAATTAAATTAAA
 
. : . : . : . : . : . :
JMSF033I01+ AGGGAAAAATNGNAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
JMSF040K21+ AGGGAAAAATNGNAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
JMSF037A17+ AGGGAAAAATCGAAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
JMSF004D12+ AGGGNAAAATNGNAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
                      ____________________________________________________________
consensus AGGGAAAAATCGAAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
 
. : . : . : . : . : . :
JMSF033I01+ AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCG
JMSF040K21+ AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCG
JMSF037A17+ AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCG
JMSF004D12+ AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCGATGTTGTATC
                      ____________________________________________________________
consensus AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCGATGTTGTATC