Contig 006365:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004D12Sequence225006365 (4)292019216
JMSF033I01Sequence374006365 (4)677012672 (3)emb|CDP20909.1|5e-72unnamed protein product [Coffea canephora]
JMSF037A17Sequence300006365 (4)703012672 (3)emb|CDP20909.1|2e-72unnamed protein product [Coffea canephora]
JMSF040K21Sequence418006365 (4)743012672 (3)emb|CDP20909.1|8e-103unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF040K21+                                                                     AG
                      ____________________________________________________________
consensus                                                                       AG
 
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JMSF033I01+                                                  TGAGGAGCTNGAAGGCCCNGA
JMSF040K21+           CCCGGGGGTNGATTTCCCCTCCAGATGGGCTCTNTNGGCTGAGGAGCTAGAAGGCCCNGA
                      ____________________________________________________________
consensus             CCCGGGGGTNGATTTCCCCTCCAGATGGGCTCTNTNGGCTGAGGAGCTAGAAGGCCCNGA
 
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JMSF033I01+           TGGTATAGAGATTGCTGCNTCNATGCTTGTTGCTGTTTCNACCTTTGCTGCTGCNTTTTT
JMSF040K21+           TGGTATAGAGATTGCTGCNTCNATGCTTGTTGCTGTTTCNACCTTTGNTGNTGCNTTTTT
                      ____________________________________________________________
consensus             TGGTATAGAGATTGCTGCNTCNATGCTTGTTGCTGTTTCNACCTTTGCTGCTGCNTTTTT
 
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JMSF033I01+           TGCTTNTTTATNTTNGGATATATNTNCCCCCCCNGNGGTGTNTNTAGAGGTAATTGTNTN
JMSF040K21+           TGCTTNTTTATNTTTGGANATATNTNCCCCCCCNGAGGTGTNTNTAGAGGTAATTGTNTA
JMSF037A17+                                     CCCCCCCNGAGGTGTNTCTAGAGGTAATTGTNTN
                      ____________________________________________________________
consensus             TGCTTNTTTATNTTTGGATATATNTNCCCCCCCNGAGGTGTNTCTAGAGGTAATTGTNTA
 
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JMSF033I01+           TNGNGAGAGGGNCNGATNAAACGATAGNTTGAAGGTTNATTTTNGGGTTTGAAAAAAGGG
JMSF040K21+           TNGNGAGAGGGNCCGNTNAAACGATAGNTTGAAGGTTNATTTTNGGGTTTGAAAAAAGGG
JMSF037A17+           TNGAGAGAGGGACCGATNAAACGATNGNTTGAAGGTTAATTTTNGGGTTTGAAAAAAGGG
JMSF004D12+                             AAACGATAGATTGAAGGTTNATTTTNGGGTTTGAAAAAAGGG
                      ____________________________________________________________
consensus             TNGAGAGAGGGACCGATNAAACGATAGATTGAAGGTTAATTTTNGGGTTTGAAAAAAGGG
 
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JMSF033I01+           GGGAAAACNGGAAGNAGNAACGAAAAATTATCNAAGTNAAAGNAAAAAAATTAAATNAAA
JMSF040K21+           GGGAAAACGGGAAGAAGAAACGNAAAATTATCCAAGTNAAAGNAAAAAAATTAAATNAAA
JMSF037A17+           GGGAAAACGGGAAGAAGAAACGAAAAATNATCNAAGTTAAAGNAAAAAAATNAAATNAAA
JMSF004D12+           GGGAAAACNGGAAGNAGNAACGNAAAATTATCCAAGTTAAAGNAAAAAAATTAAATTAAA
                      ____________________________________________________________
consensus             GGGAAAACGGGAAGAAGAAACGAAAAATTATCCAAGTTAAAGNAAAAAAATTAAATTAAA
 
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JMSF033I01+           AGGGAAAAATNGNAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
JMSF040K21+           AGGGAAAAATNGNAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
JMSF037A17+           AGGGAAAAATCGAAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
JMSF004D12+           AGGGNAAAATNGNAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
                      ____________________________________________________________
consensus             AGGGAAAAATCGAAGAAAAAAAAAAGAAAAAGAAGAAAAGAAAAGAAAAGAAACCCTCGA
 
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JMSF033I01+           AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCG          
JMSF040K21+           AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCG          
JMSF037A17+           AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCG          
JMSF004D12+           AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCGATGTTGTATC
                      ____________________________________________________________
consensus             AGGAGAGGGGAGAGCTACGAAGAGAATACAGATAACAGAGTATCGTTTCGATGTTGTATC