Contig 006359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011I20Sequence556006359 (6)
JMFN015G14Sequence551006359 (6)
JMSF003H15Sequence398006359 (6)574006359 (6)
JMSF042H03Sequence609006359 (6)571006359 (6)

Alignment

This contig is upended


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rJMSF042H03-                              CTTCAATAGTATCTTCAATTCTTTTATCTTTTTTTTTTTT
JMSF042H03+                                                             TTTTTTTTTT
                      ____________________________________________________________
consensus                                 CTTCAATAGTATCTTCAATTCTTTTATCTTTTTTTTTTTT
 
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rJMSF042H03-          AATTAAANGCAATAANGGCGNGAAAAATCGAANTCGANATTAAAATCNCTGAAAATATGC
JMFN015G14+                                                             GAAAATATGC
rJMSF003H15-                               GAAAAATCGAAATCGANATTAAAATCNCTGAAAATATGC
JMFN011I20+                                                             GAAAATATGG
JMSF042H03+           AATTAAATGCAATAAAGGCGTGAAAAATCGAAATCGAGATTAAAATCACTGAAAATATGC
                      ____________________________________________________________
consensus             AATTAAATGCAATAAAGGCGTGAAAAATCGAAATCGAGATTAAAATCACTGAAAATATGC
 
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rJMSF042H03-          GGCAAAANAAAANAANACNGAGATTACTAAAATATATAACNCNCNTCTTTCAGGGATTTT
JMFN015G14+           GGCAAAAGAAAAGAAGACAGAGATTACTAAGATATATAACACACATCTTTCATGGATTTT
rJMSF003H15-          GGCAAAAGAAAAGAANACNGAGNTTACTAANATATATAACNCNCNTCTTTCAGGGATTTT
JMFN011I20+           GGCAAAAGAAAACAAGACATAGATTACTTAGATATATAACACACATCTTTCATGTATTTT
JMSF042H03+           GGCAAAAGAAAAGAAGACAGAGATTACTAAGATATATAACACACATCTTTCATGGATTTT
                      ____________________________________________________________
consensus             GGCAAAAGAAAAGAAGACAGAGATTACTAAGATATATAACACACATCTTTCATGGATTTT
 
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rJMSF042H03-          CCAAANTTTAGGTTCAAAGGNCGGCTGAGGCTTCNCNCAANCGNACCCAAACTTTGNCNC
JMFN015G14+           CCGAAATTTAGGTTCGAAGGTCGGCTGAGGCTTCTCGCAATCGGACCCAGACTTTGTCGC
rJMSF003H15-          CCNAANTTTAGGTTCAAAGGTCGGCTGAGGCTTCNCGCAATCGGACCCAAACTTTGTCNC
JMFN011I20+           CTGAAATTTAGGTTCGAAGGTTGGTTTAGGCTTCTTGCAATGGGACCCAGACTTTGTCGC
JMSF042H03+           CCGAAATTTAGGTTCGAAGGTCGGCTGAGGCTTCTCGCAATCGGACCCAGACTTTGTCGC
                      ____________________________________________________________
consensus             CCGAAATTTAGGTTCGAAGGTCGGCTGAGGCTTCTCGCAATCGGACCCAGACTTTGTCGC
 
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rJMSF042H03-          TCNAANCTTCCCCGGCAAAGGAGNCNTTGCANGGAGNANCAAANGGNGTTNANGGNGNCG
JMFN015G14+           TCGAAGCTTCCCCGGCGAAGGAGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
rJMSF003H15-          TCGAANCTTCCCCGGCNAAGGANNCNTTGCATGGAGNATCAAATGGNGTTGATGGNGTCG
JMFN011I20+           TGGAAGCTTCCCCGGCAAAGGAGTCGTTGCATGCAGGATCACATGGTGTTGATGGTGTTG
JMSF042H03+           TCGAAGCTTCCCCGGCGAAGGAGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
JMSF003H15+                                AGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
                      ____________________________________________________________
consensus             TCGAAGCTTCCCCGGCAAAGGAGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
 
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rJMSF042H03-          GGNATGTCTANANAACGT-TCNCCNCTGGNCGNANCGNCNNCGGCNATCGCGNAATTTCC
JMFN015G14+           GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
rJMSF003H15-          GGNATGTCTANANAACGT-TCNCCGCTGGTCGNATCGNCNNCGGCNATCGCGNAATTTCC
JMFN011I20+           GGGATGTTTAGAGAACGTGTGCCCGCTGGTTGGATAGTTGTCGGCGTTCGCGGAATTTCC
JMSF042H03+           GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
JMSF003H15+           GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
                      ____________________________________________________________
consensus             GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
 
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rJMSF042H03-          ATCGNAGGTTGTTTTGCANCCGTTCANTTTCCGGCCAACAAAGGNCNCTGACAATTGACA
JMFN015G14+           ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
rJMSF003H15-          ATCGNAGGTTGTTTTGCAACCGTTCANTTTCCGGCCAACANAGGTCNCTGACAATTGACA
JMFN011I20+           TTTGAAGGTTGTTTTGCTGCCGTTCAATTTGCGGCCAACAGAGGTCGCTTCCTATTGACA
JMSF042H03+           ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
JMSF003H15+           ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
                      ____________________________________________________________
consensus             ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
 
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rJMSF042H03-          AAAAAGGGGCTGGNGGCNATGGCCTTGGNGNGGNCNCGGCTGATTGANCCCCCCNGCGNA
JMFN015G14+           AAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
rJMSF003H15-          AAAAAGGGGCTGGNGGCNATGGCCTTGGNGNGGNCNCGGCTGATTGATCCCCCCTGCGTA
JMFN011I20+           AAAAAGGGGCTGGTGACGATGCCCTTGGTGTGGTCGCGTTTGATTGATCCCCCCTGTGTA
JMSF042H03+           AAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
JMSF003H15+           AAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
                      ____________________________________________________________
consensus             AAAAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
 
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rJMSF042H03-          ACCATANCNCCNGNCCCCGGCAAGGCAAAAAGGGGCTGGNGGCNATGGCCTTGGNGNGGN
JMFN015G14+           ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
rJMSF003H15-          ACCATANCTCCNGTCNCCGGCAAGGCAAAAAGGGGCTGGNGGCNATGGCCTTGGTGNGGN
JMFN011I20+           GCCATAGCTCCTGTTGCCGGCGAGGCAATAATGGCCTGGTGGCGATGCCCTTGGTGTGGT
JMSF042H03+           ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
JMSF003H15+           ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
                      ____________________________________________________________
consensus             ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
 
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rJMSF042H03-          CANGGCTNATTGANCCCCCCNGCGNAACCATANCTCCNGTCNCCGGCNAGGC        
JMFN015G14+           CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
rJMSF003H15-          CATGGCTGATTGATCCCCCCTGCGNAACCATAGCTCCNGTCNCCGGCNAGGCTTCNATCA
JMFN011I20+           CATGGGTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGG              
JMSF042H03+           CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
JMSF003H15+           CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
                      ____________________________________________________________
consensus             CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
 
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JMFN015G14+           CGATTGCAATGGAGTCGCAGACGGTCTGATGGA                           
rJMSF003H15-          CNATTGCAANGGANTCNCAAACGGNCTGATGGAGTTGATGCCTTGATGGGT         
JMSF042H03+           CGATTGCAATGGAGTCGCAGACGGTCTGATGGAGTTGATGCCTTGATGGGTGAGCTGC  
JMSF003H15+           CGATTGCAATGGAGTCGCAGACGGTCTGATGGAGTTGATGCCTTGATGGGTGAGCTGCAC
                      ____________________________________________________________
consensus             CGATTGCAATGGAGTCGCAGACGGTCTGATGGAGTTGATGCCTTGATGGGTGAGCTGCAC