Contig 006354:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B19Sequence328006354 (4)ref|XP_009631176.1|5e-22PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial795005598 (3)ref|XP_009778230.1|3e-75PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF020F12Sequence681006354 (4)ref|XP_009631176.1|4e-119PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial764005598 (3)ref|XP_009778230.1|1e-93PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF027N13Sequence652006354 (4)ref|XP_009778230.1|3e-113PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF042E09Sequence802006354 (4)ref|XP_009631176.1|4e-140PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial819005598 (3)ref|XP_009778230.1|4e-67PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042E09+ GAATGCACGTCGATTTACAAACTCAG
                      ____________________________________________________________
consensus GAATGCACGTCGATTTACAAACTCAG
 
. : . : . : . : . : . :
JMSF042E09+ CAGTAGGGGTGTGGTAAAGTTCTTCTTCAGAAGTAATTGTCATAAATCTTTGAGGAATAT
                      ____________________________________________________________
consensus CAGTAGGGGTGTGGTAAAGTTCTTCTTCAGAAGTAATTGTCATAAATCTTTGAGGAATAT
 
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JMSF020F12+ TGCTCAACAAGCTCAATAATTTTAG
JMSF042E09+ CTCTCGGAGCTTCAACCTCTGACCAACTCTTTGACTGCTCAACAAGCTCAATAATTTTAG
                      ____________________________________________________________
consensus CTCTCGGAGCTTCAACCTCTGACCAACTCTTTGACTGCTCAACAAGCTCAATAATTTTAG
 
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JMSF020F12+ AAGCTACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
JMSF042E09+ AAGCTACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
JMSF027N13+ TACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
                      ____________________________________________________________
consensus AAGCTACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
 
. : . : . : . : . : . :
JMSF020F12+ AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
JMSF042E09+ AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
JMSF027N13+ AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
                      ____________________________________________________________
consensus AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
 
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JMSF020F12+ CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
JMSF042E09+ CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
JMSF027N13+ CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
                      ____________________________________________________________
consensus CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
 
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JMSF020F12+ TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
JMSF042E09+ TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
JMSF027N13+ TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
                      ____________________________________________________________
consensus TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
 
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JMSF020F12+ TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
JMSF042E09+ TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
JMSF027N13+ TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
                      ____________________________________________________________
consensus TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
 
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JMSF020F12+ TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
JMSF042E09+ TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
JMSF027N13+ TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
                      ____________________________________________________________
consensus TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
 
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JMSF020F12+ TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
JMSF042E09+ TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
JMSF027N13+ TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
JMSF003B19+ ACACCATCCAGCATCATGTCATCATACA
                      ____________________________________________________________
consensus TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
 
. : . : . : . : . : . :
JMSF020F12+ CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
JMSF042E09+ CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
JMSF027N13+ CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
JMSF003B19+ CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
                      ____________________________________________________________
consensus CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
 
. : . : . : . : . : . :
JMSF020F12+ CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
JMSF042E09+ CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
JMSF027N13+ CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
JMSF003B19+ CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
                      ____________________________________________________________
consensus CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
 
. : . : . : . : . : . :
JMSF020F12+ TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
JMSF042E09+ TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
JMSF027N13+ TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
JMSF003B19+ TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
                      ____________________________________________________________
consensus TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
 
. : . : . : . : . : . :
JMSF020F12+ TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCA
JMSF042E09+ TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCA
JMSF027N13+ TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCA
JMSF003B19+ TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCATAAACC
                      ____________________________________________________________
consensus TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCATAAACC
 
. : . : . : . : . : . :
JMSF003B19+ CTCGAGATTTCAGGTAATGAACTGAATAAGCCTACAGTGTTGAGGTATAGGTGCACGATC
                      ____________________________________________________________
consensus CTCGAGATTTCAGGTAATGAACTGAATAAGCCTACAGTGTTGAGGTATAGGTGCACGATC