Contig 006354:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B19Sequence328006354 (4)ref|XP_009631176.1|5e-22PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial795005598 (3)ref|XP_009778230.1|3e-75PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF020F12Sequence681006354 (4)ref|XP_009631176.1|4e-119PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial764005598 (3)ref|XP_009778230.1|1e-93PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF027N13Sequence652006354 (4)ref|XP_009778230.1|3e-113PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF042E09Sequence802006354 (4)ref|XP_009631176.1|4e-140PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial819005598 (3)ref|XP_009778230.1|4e-67PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial

Alignment

This contig is upended


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JMSF042E09+                                             GAATGCACGTCGATTTACAAACTCAG
                      ____________________________________________________________
consensus                                               GAATGCACGTCGATTTACAAACTCAG
 
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JMSF042E09+           CAGTAGGGGTGTGGTAAAGTTCTTCTTCAGAAGTAATTGTCATAAATCTTTGAGGAATAT
                      ____________________________________________________________
consensus             CAGTAGGGGTGTGGTAAAGTTCTTCTTCAGAAGTAATTGTCATAAATCTTTGAGGAATAT
 
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JMSF020F12+                                              TGCTCAACAAGCTCAATAATTTTAG
JMSF042E09+           CTCTCGGAGCTTCAACCTCTGACCAACTCTTTGACTGCTCAACAAGCTCAATAATTTTAG
                      ____________________________________________________________
consensus             CTCTCGGAGCTTCAACCTCTGACCAACTCTTTGACTGCTCAACAAGCTCAATAATTTTAG
 
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JMSF020F12+           AAGCTACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
JMSF042E09+           AAGCTACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
JMSF027N13+               TACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
                      ____________________________________________________________
consensus             AAGCTACATCATCAGCAAGAGGTTCCTGATTCTTGTGAGCAGCTATAAGTCCAGCATAGC
 
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JMSF020F12+           AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
JMSF042E09+           AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
JMSF027N13+           AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
                      ____________________________________________________________
consensus             AATATTTGTTCAAACCCACAGCAGCTGCAGTCATATCTCGAACAATTGCATATACTTGAT
 
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JMSF020F12+           CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
JMSF042E09+           CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
JMSF027N13+           CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
                      ____________________________________________________________
consensus             CTAGTCGACCTTCAGCTGCACATGCATTAAGTAGACAGACATAGGTTTGTCCAGATGGCT
 
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JMSF020F12+           TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
JMSF042E09+           TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
JMSF027N13+           TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
                      ____________________________________________________________
consensus             TGACTTCTGATCGTTTCATTTCTTCTAAAACCCGGATTGCTTGATCAGAGTTCTTGCATT
 
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JMSF020F12+           TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
JMSF042E09+           TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
JMSF027N13+           TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
                      ____________________________________________________________
consensus             TGCCACAGGTAGAAATCAAGAAGTTGTACAAAGCAACATCTGGAACCAAACCCATGGCTT
 
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JMSF020F12+           TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
JMSF042E09+           TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
JMSF027N13+           TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
                      ____________________________________________________________
consensus             TCATTTCATCCTTGAAAAACAGTGCATCTTGCAATCGAGCACCTTTCATAGTCCCCACTA
 
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JMSF020F12+           TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
JMSF042E09+           TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
JMSF027N13+           TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
JMSF003B19+                                           ACACCATCCAGCATCATGTCATCATACA
                      ____________________________________________________________
consensus             TCAGCGAATGAAATGTATCCCTCTCTGGCTTTACACCATCCAGCATCATGTCATCATACA
 
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JMSF020F12+           CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
JMSF042E09+           CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
JMSF027N13+           CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
JMSF003B19+           CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
                      ____________________________________________________________
consensus             CATCCCTCAGCAAATAATGTCTTCGCTGAGAGGTGATGGAGGTTATAACGGTGTTGTACT
 
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JMSF020F12+           CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
JMSF042E09+           CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
JMSF027N13+           CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
JMSF003B19+           CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
                      ____________________________________________________________
consensus             CGGAGTCATTGTTGGCATAATTTCGCTTGGCGTACTCCTCAGGCGACGCCGCGAAGAATC
 
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JMSF020F12+           TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
JMSF042E09+           TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
JMSF027N13+           TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
JMSF003B19+           TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
                      ____________________________________________________________
consensus             TTCGCCCGACGCCTCGAAGCAGCAAACGGTTATTACTAGCTAGGGTTTGGAGGAGCCTCA
 
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JMSF020F12+           TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCA      
JMSF042E09+           TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCA      
JMSF027N13+           TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCA      
JMSF003B19+           TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCATAAACC
                      ____________________________________________________________
consensus             TGATGATGGTGATGAGAAGTGATCACTTCGCTGCCGGAGACTGGGGACTGCGCATAAACC
 
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JMSF003B19+           CTCGAGATTTCAGGTAATGAACTGAATAAGCCTACAGTGTTGAGGTATAGGTGCACGATC
                      ____________________________________________________________
consensus             CTCGAGATTTCAGGTAATGAACTGAATAAGCCTACAGTGTTGAGGTATAGGTGCACGATC