Contig 006352:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS165D10Sequence615006352 (4)ref|XP_009627645.1|3e-21PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana tomentosiformis]
JMSF002L23Sequence334006352 (4)768009880 (4)ref|XP_009777958.1|6e-68PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]
JMSF003B13Sequence242006352 (4)ref|XP_004248755.1|5e-05PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Solanum lycopersicum] r750017055ref|XP_009777958.1|2e-37PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana sylvestris]
JMSF052B10Sequence719006352 (4)ref|XP_009627645.1|4e-27PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Nicotiana tomentosiformis]880009880 (4)ref|XP_004248755.1|6e-82PREDICTED: E3 ubiquitin-protein ligase MBR2 isoform X2 [Solanum lycopersicum] r

Alignment

This contig is upended


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JMSF052B10+                                                                    TGG
                      ____________________________________________________________
consensus                                                                      TGG
 
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JMSF052B10+           AATTAAAATGATGCGTACTAGNCCTGCTAATCGGATGGTTGCCACCATAACTGCTACTGA
                      ____________________________________________________________
consensus             AATTAAAATGATGCGTACTAGNCCTGCTAATCGGATGGTTGCCACCATAACTGCTACTGA
 
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JMFS165D10+                                     GACTCAAACCCCCTTTCTTCTGACCCTTGATCAG
JMSF052B10+           AGCTCTTATTAGCAAAAACATTGGAGGACTCAAACCCCCTTTCTTCTGACCCTTGATCAG
                      ____________________________________________________________
consensus             AGCTCTTATTAGCAAAAACATTGGAGGACTCAAACCCCCTTTCTTCTGACCCTTGATCAG
 
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JMFS165D10+           CTACAGCATAATTGCTCGATGAAGAAGGCCACATATGCCCTGCTTTTAAATCGCTGCAAT
JMSF052B10+           CTACAGCATAATTGCTCGATGAAGAAGGCCACATATGCCCTGCTTTTAAATCGCTGCAAT
                      ____________________________________________________________
consensus             CTACAGCATAATTGCTCGATGAAGAAGGCCACATATGCCCTGCTTTTAAATCGCTGCAAT
 
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JMFS165D10+           AAACACGACCATTTAAATCGGCTGCAGAGCTAGACTCACCTTGATCCCAGCCACTGAAAC
JMSF052B10+           AAACACGACCATTTAAATCGGCTGCAGAGCTAGACTCACCTTGATCCCAGCCACTGAAAC
                      ____________________________________________________________
consensus             AAACACGACCATTTAAATCGGCTGCAGAGCTAGACTCACCTTGATCCCAGCCACTGAAAC
 
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JMSF003B13+                                                                GAAAAAC
JMFS165D10+           TAGGAGCACTCGGAGAACCAGCATAGCCCTCACTAGCAGCAGGCACTGAATTTGAAAAAC
JMSF052B10+           TAGGAGCACTCGGAGAACCAGCATAGCCCTCACTAGCAGCAGGCACTGAATTTGAAAAAC
                      ____________________________________________________________
consensus             TAGGAGCACTCGGAGAACCAGCATAGCCCTCACTAGCAGCAGGCACTGAATTTGAAAAAC
 
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JMSF003B13+           GGCTCCCTGCTGGATCAAGAATGTTATCCCAAGGGCTAGACCGATCCATGGAACTGCTAC
JMFS165D10+           GGCTCCCTGCTGGATCAAGAATGTTATCCCAAGGGCTAGACCGATCCATGGAACTGCTAC
JMSF052B10+           GGCTCCCTGCTGGATCAAGAATGTTATCCCAAGGGCTAGACCGATCCATGGAACTGCTAC
                      ____________________________________________________________
consensus             GGCTCCCTGCTGGATCAAGAATGTTATCCCAAGGGCTAGACCGATCCATGGAACTGCTAC
 
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JMSF003B13+           TGGGCACCAATCCCTGATTAAGGTCAATGGTTTCAGTTAAGGAATCCAAAATACTTCTTC
JMFS165D10+           TGGGCACCAATCCCTGATTAAGGTCAATGGTTTCAGTTAAGGAATCCAAAATACTTCTTC
JMSF052B10+           TGGGCACCAATCCCTGATTAAGGTCAATGGTTTCAGTTAAGGAATCCAAAATACTTCTTC
                      ____________________________________________________________
consensus             TGGGCACCAATCCCTGATTAAGGTCAATGGTTTCAGTTAAGGAATCCAAAATACTTCTTC
 
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JMSF003B13+           CTCCTTGCATCTTGGTCAATTCCTGAAAAACTGATAGCAGAAGATGATCGGATTACGCGA
JMFS165D10+           CTCCTTGCATCTTGGTCAATTCCTGAAAAACTGATAGCAGAAGATGATCGGATTACGCGA
JMSF052B10+           CTCCTTGCATCTTGGTCAATTCCTGAAAAACTGATAGCAGAAGATGATCGGATTACGCGA
JMSF002L23+                                     AAAACTGATAGCAGAAGATGATCGGATTACGCGA
                      ____________________________________________________________
consensus             CTCCTTGCATCTTGGTCAATTCCTGAAAAACTGATAGCAGAAGATGATCGGATTACGCGA
 
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JMSF003B13+           AGAGGGCAATAAGCACAAATGATATATGTATGTGAAAATCAGCAATCACATT        
JMFS165D10+           AGAGGGCAATAAGCACAAATGATATATGTATGTGAAAATCAGCAATCACATTCTACGGTA
JMSF052B10+           AGAGGGCAATAAGCACAAATGATATATGTATGTGAAAATCAGCAATCACATT-TACGGTA
JMSF002L23+           AGAGGGCAATAAGCACAAATGATATATGTATGTGAAAATCAGCAATCACATTCTACGGTA
                      ____________________________________________________________
consensus             AGAGGGCAATAAGCACAAATGATATATGTATGTGAAAATCAGCAATCACATTCTACGGTA
 
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JMFS165D10+           GCAAAGGGTATGTATGTATGTATATATAGTACGACGTCGTAGCCGAAGCAGCACCGCTGG
JMSF052B10+           GCAAAGGGTATGTATGTATGTATATATAGTACGACGTCGTAGCCGAAGCAGCACCGCTGG
JMSF002L23+           GCAAAGGGTATGTATGTATGTATATATAGTACGACGTCGTAGCCGAAGCAGCACCGCTGG
                      ____________________________________________________________
consensus             GCAAAGGGTATGTATGTATGTATATATAGTACGACGTCGTAGCCGAAGCAGCACCGCTGG
 
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JMFS165D10+           GCAAATGCAGGGTAGTGAGGTGTGGATATATACGGAGAAAGAGTAAAAGACTCTACGTAT
JMSF052B10+           GCAAATGCAGGGTAGTGAGGTGTGGATATATACGGAGAAAGAGTAAAAGACTCTACGTAT
JMSF002L23+           GCAAATGCAGGGTAGTGAGGTGTGGATATATACGGAGAAAGAGTAAAAGACTCTACGTAT
                      ____________________________________________________________
consensus             GCAAATGCAGGGTAGTGAGGTGTGGATATATACGGAGAAAGAGTAAAAGACTCTACGTAT
 
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JMFS165D10+           GATGGTGTGCCTCTGCGTGGACGAGAGAAAAGAGAACAGAG                   
JMSF052B10+           GATGGTGTGCCTCTGCGTGGACGAGAGAAAAGAGAACAGAGGCCCCTAACATTAAC    
JMSF002L23+           GATGGTGTGCCTCTGCGTGGACGAGAGAAAAGAGAACAGAGGCCCCTAACATTAACAAAG
                      ____________________________________________________________
consensus             GATGGTGTGCCTCTGCGTGGACGAGAGAAAAGAGAACAGAGGCCCCTAACATTAACAAAG
 
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JMSF002L23+           ATTAATGGGAAGTTTGTGGCTAACCTAGTAATTAAGGCGTTGTTGCCTACAATAATCCCC
                      ____________________________________________________________
consensus             ATTAATGGGAAGTTTGTGGCTAACCTAGTAATTAAGGCGTTGTTGCCTACAATAATCCCC