Contig 006343:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF040A02Sequence560006343 (4)gb|AAS79603.1|7e-43prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [I683021307gb|AAS79603.1|5e-97prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [I
JMFN033D13Sequence626006343 (4)gb|AAS79603.1|8e-67prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [I
JMFS011C02Sequence600006343 (4)gb|AAS79603.1|1e-55prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [I
JMSF002B02Sequence315006343 (4)gb|AAS79603.1|1e-07prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [I

Alignment

This contig is upended


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JMFN033D13+                       TCAAACTGGTCACAAGGTATGGCCTCACAGTTGGGATACGCCTTCCCG
JMFS011C02+                                                            ACGCCTTCCCG
                      ____________________________________________________________
consensus                         TCAAACTGGTCACAAGGTATGGCCTCACAGTTGGGATACGCCTTCCCG
 
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JMFN033D13+           GCGGCGGCTTCGCTATACGCGCCGGGAACACCCTGGTAAGCGACGCGGAGCAGCGAGCCG
JMFS011C02+           GCGGCGGCTTCGCTATACGCGCCGGGAACACCCTGGTAAGCGACGCGGAGCAGCGAGCCG
JMFF040A02+                                                  GCGACGCGGAGCAGCGAGCCG
                      ____________________________________________________________
consensus             GCGGCGGCTTCGCTATACGCGCCGGGAACACCCTGGTAAGCGACGCGGAGCAGCGAGCCG
 
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JMFN033D13+           TGCATCGGCGCCGGCGAGAGATCCGTAATCGTGAGCGGCTTAGGAAGGCTGCTCTCGATG
JMFS011C02+           TGCATCGGCGCCGGCGAGAGATCCGTAATCGTGAGCGGCTTAGGAAGGCTGCTCTCGATG
JMFF040A02+           TGCATCGGCGCCGGCGAGAGATCCGTAATCGTGAGCGGCTTAGGAAGGCTGCTCTCGATG
                      ____________________________________________________________
consensus             TGCATCGGCGCCGGCGAGAGATCCGTAATCGTGAGCGGCTTAGGAAGGCTGCTCTCGATG
 
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JMFN033D13+           GGGACTAGATCTAGCGTCGACGTATGGCCGTTCACGGCGGTGATATTCCCCGCATCTCCG
JMFS011C02+           GGGACTAGATCTAGCGTCGACGTATGGCCGTTCACGGCGGTGATATTCCCCGCATCTCCG
JMFF040A02+           GGGACTAGATCTAGCGTCGACGTATGGCCGTTCACGGCGGTGATATTCCCCGCATCTCCG
                      ____________________________________________________________
consensus             GGGACTAGATCTAGCGTCGACGTATGGCCGTTCACGGCGGTGATATTCCCCGCATCTCCG
 
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JMFN033D13+           CCGCTCTTCTGAACATCCTGCTGCTGCGACACCACCTTGCTCGCCAAAATGGAGCACGAG
JMFS011C02+           CCGCTCTTCTGAACATCCTGCTGCTGCGACACCACCTTGCTCGCCAAAATGGAGCACGAG
JMFF040A02+           CCGCTCTTCTGAACATCCTGCTGCTGCGACACCACCTTGCTCGCCAAAATGGAGCACGAG
                      ____________________________________________________________
consensus             CCGCTCTTCTGAACATCCTGCTGCTGCGACACCACCTTGCTCGCCAAAATGGAGCACGAG
 
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JMFN033D13+           CTCTGCCAATCAGCTCGCGTCGCGCCGATGTGGCCACTATATCTTGTCGGCGCGCTGTTG
JMFS011C02+           CTCTGCCAATCAGCTCGCGTCGCGCCGATGTGGCCACTATATCTTGTCGGCGCGCTGTTG
JMFF040A02+           CTCTGCCAATCAGCTCGCGTCGCGCCGATGTGGCCACTATATCTTGTCGGCGCGCTGTTG
JMSF002B02+                                                        GTCGGCGCGCTGTTN
                      ____________________________________________________________
consensus             CTCTGCCAATCAGCTCGCGTCGCGCCGATGTGGCCACTATATCTTGTCGGCGCGCTGTTG
 
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JMFN033D13+           GTGTTCACAGTAGCGCTGGAATTCGCCGCCGCGGCGCCGGCGGCGTTGGCCGAGTCAAAC
JMFS011C02+           GTGTTCACAGTAGCGCTGGAATTCGCCGCCGCGGCGCCGGCGGCGTTGGCCGAGTCAAAC
JMFF040A02+           GTGTTCACAGTAGCGCTGGAATTCGCCGCCGCGGCGCCGGCGGCGTTGGCCGAGTCAAAC
JMSF002B02+           GTGTTCACAGTAGCGCTGGAATTCGCCGCCGCGGCGCCGGCGGCGTTGGCCGAGTCAAAC
                      ____________________________________________________________
consensus             GTGTTCACAGTAGCGCTGGAATTCGCCGCCGCGGCGCCGGCGGCGTTGGCCGAGTCAAAC
 
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JMFN033D13+           TTGAACACGCATTGGACCGCGAGACGATTGGAACCGACCCGGTGAGTGAAACCCGGCGGC
JMFS011C02+           TTGAACACGCATTGGACCGCGAGACGATTGGAACCGACCCGGTGAGTGAAACCCGGCGGC
JMFF040A02+           TTGAACACGCATTGGACCGCGAGACGATTGGAACCGACCCGGTGAGTGAAACCCGGCGGC
JMSF002B02+           TTGAACACGCATTGGACCGCGAGACGATTGGAACCGACCCGGTGAGTGAAACCCGGCGGC
                      ____________________________________________________________
consensus             TTGAACACGCATTGGACCGCGAGACGATTGGAACCGACCCGGTGAGTGAAACCCGGCGGC
 
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JMFN033D13+           GAAGACGCCCGGGTTAACGATTTGAGACTAATACCAGAAGATGACGTAAGGGATTGCATA
JMFS011C02+           GAAGACGCCCGGGTTAACGATTTGAGACTAATACCAGAAGATGACGTAAGGGATTGCATA
JMFF040A02+           GAAGACGCCCGGGTTAACGATTTGAGACTAATACCAGAAGATGACGTAAGGGATTGCATA
JMSF002B02+           GAAGACGCCCGGGTTAACGATTTGAGACTAATACCAGAAGATGACGTAAGGGATTGCATA
                      ____________________________________________________________
consensus             GAAGACGCCCGGGTTAACGATTTGAGACTAATACCAGAAGATGACGTAAGGGATTGCATA
 
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JMFN033D13+           GCTCAACGTGGGGACTCAAATGGAAATATGAGATAAGATCCGTTCCAAATTGGAAACTGA
JMFS011C02+           GCTCAACGTGGGGACTCAAATGGAAATATGAGATAAGATCCGTTCCAAATTGGAAACTGA
JMFF040A02+           GCTCAACGTGGGGACTCAAATGGAAATATGAGATAAGATCCGTTCCAAATTGGAAACTGA
JMSF002B02+           GCTCAACGTGGGGACTCAAATGGAAATATGAGATAAGATCCGTTCCAAATTGGAAACTGA
                      ____________________________________________________________
consensus             GCTCAACGTGGGGACTCAAATGGAAATATGAGATAAGATCCGTTCCAAATTGGAAACTGA
 
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JMFN033D13+           AAGATATAGAAAGAGAGAGGTAAAAGCTTGTTGTTCTC                      
JMFS011C02+           AAGATATAGAAAGAGAGAGGTAAAAGCTTGTTGTTCTCTGTGAAGGGAA           
JMFF040A02+           AAGATATAGAAAGAGAGAGGTAAAAGCTTGTTGTTCTCTGTGAAGGGAACGTCCAAGCT 
JMSF002B02+           AAGATATAGAAAGAGAGAGGTAAAAGCTTGTTGTTCTCTGTGAAGGGAACGTCCAAGCTC
                      ____________________________________________________________
consensus             AAGATATAGAAAGAGAGAGGTAAAAGCTTGTTGTTCTCTGTGAAGGGAACGTCCAAGCTC