Contig 006340:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001N06Sequence354006340 (2)ref|XP_009603110.1|2e-11PREDICTED: dnaJ homolog subfamily A member 2 [Nicotiana tomentosiformis]717001425 (2)emb|CDO98167.1|2e-60unnamed protein product [Coffea canephora]
JMSF035F13Sequence669006340 (2)ref|XP_009603110.1|2e-73PREDICTED: dnaJ homolog subfamily A member 2 [Nicotiana tomentosiformis]724001425 (2)emb|CDO98167.1|2e-59unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF035F13+                                                            CCCTTGGTAAC
                      ____________________________________________________________
consensus                                                              CCCTTGGTAAC
 
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JMSF035F13+           AGTGCTACGACGACCTGTTGGCCCAGTTCCAAAGCCAGCTGCATCCATTCCAAAATTGCC
                      ____________________________________________________________
consensus             AGTGCTACGACGACCTGTTGGCCCAGTTCCAAAGCCAGCTGCATCCATTCCAAAATTGCC
 
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JMSF035F13+           AAGACCAGATCCAAAAAATGTCTCAAACAGATCAAAAGGGTTTGTCGTATAAGCACCAGC
                      ____________________________________________________________
consensus             AAGACCAGATCCAAAAAATGTCTCAAACAGATCAAAAGGGTTTGTCGTATAAGCACCAGC
 
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JMSF035F13+           TTCAGCCCCTACGGTACTTCTAACCCCAGCTTCCCCGTATTGATCGTATAGAGCTCTCTT
                      ____________________________________________________________
consensus             TTCAGCCCCTACGGTACTTCTAACCCCAGCTTCCCCGTATTGATCGTATAGAGCTCTCTT
 
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JMSF035F13+           TTTGTCATCTGATAATACCTCATAAGCATCTTTAATCGCCTTAAATTTTTCAGTTGCTTC
                      ____________________________________________________________
consensus             TTTGTCATCTGATAATACCTCATAAGCATCTTTAATCGCCTTAAATTTTTCAGTTGCTTC
 
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JMSF035F13+           AGGTGCCTTGTTGACATCAGGGTGGTACTCACGAGCTAACTTCCGATAAGCGGCCTTAAT
                      ____________________________________________________________
consensus             AGGTGCCTTGTTGACATCAGGGTGGTACTCACGAGCTAACTTCCGATAAGCGGCCTTAAT
 
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JMSF035F13+           CTCTTTACTGCTAGCAGATTTGGTGACCCCGAGAGTGGAGTAATAATCAGCTGCGGCGGC
JMSF001N06+                 ACTGCTAGCAGATTTGGTGACCCCGAGAGTGGAGTAATAATCAGCTGCGGCGGC
                      ____________________________________________________________
consensus             CTCTTTACTGCTAGCAGATTTGGTGACCCCGAGAGTGGAGTAATAATCAGCTGCGGCGGC
 
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JMSF035F13+           CACCACCAATCTCCCGAACCGCCTCGCCGATATCTTCCTGTCGTACTGAGACGAAGTGGA
JMSF001N06+           CACCACCAATCTCCCGAACCGCCTCGCCGATATCTTCCTGTCGTACTGAGACGAAGTGGA
                      ____________________________________________________________
consensus             CACCACCAATCTCCCGAACCGCCTCGCCGATATCTTCCTGTCGTACTGAGACGAAGTGGA
 
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JMSF035F13+           AAAAGAAGAAGAAGAGAGGGAGATGGAAATCAGGAACCTCTTGTGGGACCAGAGATGGGT
JMSF001N06+           AAAAGAAGAAGAAGAGAGGGAGATGGAAATCAGGAACCTCTTGTGGGACCAGAGATGGGT
                      ____________________________________________________________
consensus             AAAAGAAGAAGAAGAGAGGGAGATGGAAATCAGGAACCTCTTGTGGGACCAGAGATGGGT
 
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JMSF035F13+           CCCACCGGCAAAGAAGGTAGAAGACGAAGAAGGATGAGGCGGGAGAGAAGGGCGGAGTGA
JMSF001N06+           CCCACCGGCAAAGAAGGTAGAAGACGAAGAAGGATGAGGCGGGAGAGAAGGGCGGAGTGA
                      ____________________________________________________________
consensus             CCCACCGGCAAAGAAGGTAGAAGACGAAGAAGGATGAGGCGGGAGAGAAGGGCGGAGTGA
 
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JMSF035F13+           CAGAGAGGCCGTGCAGGCCATTGTGGCGGTTGTCATTGGGCGTGAGAAACTACACGCGCC
JMSF001N06+           CAGAGAGGCCGTGCAGGCCATTGTGGCGGTTGTCATTGGGCGTGAGAAACTACACGCGCC
                      ____________________________________________________________
consensus             CAGAGAGGCCGTGCAGGCCATTGTGGCGGTTGTCATTGGGCGTGAGAAACTACACGCGCC
 
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JMSF035F13+           ACCCAAGCGTTCGATGGTTTGCCTAGGAGAAAAAATGGAGGGAGCGGTTGATTTT     
JMSF001N06+           ACCCAAGCGTTCGATGGTTTGCCTAGGAGAAAAAATGGAGGGAGCGGTTGATTTTGCCCC
                      ____________________________________________________________
consensus             ACCCAAGCGTTCGATGGTTTGCCTAGGAGAAAAAATGGAGGGAGCGGTTGATTTTGCCCC