Contig 006338:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K15Sequence217006338 (2)ref|XP_006349612.1|7e-07PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Solanum tu642007141 (2)gb|KDO51438.1|3e-71hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]
JMSF028H16Sequence672006338 (2)ref|XP_004248727.1|2e-62PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Solanum lycoper722007141 (2)gb|KDO51438.1|2e-88hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]

Alignment

This contig is upended


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JMSF028H16+ GCTACTTTGACT
                      ____________________________________________________________
consensus GCTACTTTGACT
 
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JMSF028H16+ AGGGGTATCTGTGTTGTGTAAGTGCAGGCCATCAGCGATGCTGCTAGAAGAGCCGATGTT
                      ____________________________________________________________
consensus AGGGGTATCTGTGTTGTGTAAGTGCAGGCCATCAGCGATGCTGCTAGAAGAGCCGATGTT
 
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JMSF028H16+ CCTAAGAATATGGGCGATGAAAACATGTGATCGAAGCCAAGAGTGAGAACCCATCTCCAG
                      ____________________________________________________________
consensus CCTAAGAATATGGGCGATGAAAACATGTGATCGAAGCCAAGAGTGAGAACCCATCTCCAG
 
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JMSF028H16+ TTGAAGAACCCAAACAGAGGATGATCTTCGGGGAACTTCTGAAAATAGAAATCTGGAGCC
                      ____________________________________________________________
consensus TTGAAGAACCCAAACAGAGGATGATCTTCGGGGAACTTCTGAAAATAGAAATCTGGAGCC
 
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JMSF028H16+ TCCCCTTGTTCGATGATTGATCCTATGGCCATTAAGCCAGCGAGGGCAAACATCTCAGAT
                      ____________________________________________________________
consensus TCCCCTTGTTCGATGATTGATCCTATGGCCATTAAGCCAGCGAGGGCAAACATCTCAGAT
 
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JMSF028H16+ ATAGCGANGGTCAAACTAGACAGACTCGCCACTACCCTTTTGGGTAATCTCCTCAACAGC
                      ____________________________________________________________
consensus ATAGCGANGGTCAAACTAGACAGACTCGCCACTACCCTTTTGGGTAATCTCCTCAACAGC
 
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JMSF028H16+ CCCAAACCACCAGCTTTACTCTTCTTCGCAGGCGGTGGACCCGTCGGAGAGGCACCATTT
                      ____________________________________________________________
consensus CCCAAACCACCAGCTTTACTCTTCTTCGCAGGCGGTGGACCCGTCGGAGAGGCACCATTT
 
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JMSF028H16+ CCGGCGTCGCCGGCGTCCAAAAGCGTGGGTGCTCCGTCAGATTCCGGCACCCTAATCTTG
                      ____________________________________________________________
consensus CCGGCGTCGCCGGCGTCCAAAAGCGTGGGTGCTCCGTCAGATTCCGGCACCCTAATCTTG
 
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JMSF028H16+ CTGGGCGCACTGTTCTCCTTGGCACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
JMSF001K15+ ACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
                      ____________________________________________________________
consensus CTGGGCGCACTGTTCTCCTTGGCACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
 
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JMSF028H16+ AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
JMSF001K15+ AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
                      ____________________________________________________________
consensus AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
 
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JMSF028H16+ AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
JMSF001K15+ AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
                      ____________________________________________________________
consensus AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
 
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JMSF028H16+ AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC
JMSF001K15+ AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC
                      ____________________________________________________________
consensus AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC