Contig 006338:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K15Sequence217006338 (2)ref|XP_006349612.1|7e-07PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Solanum tu642007141 (2)gb|KDO51438.1|3e-71hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]
JMSF028H16Sequence672006338 (2)ref|XP_004248727.1|2e-62PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Solanum lycoper722007141 (2)gb|KDO51438.1|2e-88hypothetical protein CISIN_1g0090582mg, partial [Citrus sinensis]

Alignment

This contig is upended


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JMSF028H16+                                                           GCTACTTTGACT
                      ____________________________________________________________
consensus                                                             GCTACTTTGACT
 
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JMSF028H16+           AGGGGTATCTGTGTTGTGTAAGTGCAGGCCATCAGCGATGCTGCTAGAAGAGCCGATGTT
                      ____________________________________________________________
consensus             AGGGGTATCTGTGTTGTGTAAGTGCAGGCCATCAGCGATGCTGCTAGAAGAGCCGATGTT
 
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JMSF028H16+           CCTAAGAATATGGGCGATGAAAACATGTGATCGAAGCCAAGAGTGAGAACCCATCTCCAG
                      ____________________________________________________________
consensus             CCTAAGAATATGGGCGATGAAAACATGTGATCGAAGCCAAGAGTGAGAACCCATCTCCAG
 
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JMSF028H16+           TTGAAGAACCCAAACAGAGGATGATCTTCGGGGAACTTCTGAAAATAGAAATCTGGAGCC
                      ____________________________________________________________
consensus             TTGAAGAACCCAAACAGAGGATGATCTTCGGGGAACTTCTGAAAATAGAAATCTGGAGCC
 
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JMSF028H16+           TCCCCTTGTTCGATGATTGATCCTATGGCCATTAAGCCAGCGAGGGCAAACATCTCAGAT
                      ____________________________________________________________
consensus             TCCCCTTGTTCGATGATTGATCCTATGGCCATTAAGCCAGCGAGGGCAAACATCTCAGAT
 
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JMSF028H16+           ATAGCGANGGTCAAACTAGACAGACTCGCCACTACCCTTTTGGGTAATCTCCTCAACAGC
                      ____________________________________________________________
consensus             ATAGCGANGGTCAAACTAGACAGACTCGCCACTACCCTTTTGGGTAATCTCCTCAACAGC
 
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JMSF028H16+           CCCAAACCACCAGCTTTACTCTTCTTCGCAGGCGGTGGACCCGTCGGAGAGGCACCATTT
                      ____________________________________________________________
consensus             CCCAAACCACCAGCTTTACTCTTCTTCGCAGGCGGTGGACCCGTCGGAGAGGCACCATTT
 
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JMSF028H16+           CCGGCGTCGCCGGCGTCCAAAAGCGTGGGTGCTCCGTCAGATTCCGGCACCCTAATCTTG
                      ____________________________________________________________
consensus             CCGGCGTCGCCGGCGTCCAAAAGCGTGGGTGCTCCGTCAGATTCCGGCACCCTAATCTTG
 
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JMSF028H16+           CTGGGCGCACTGTTCTCCTTGGCACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
JMSF001K15+                                  ACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
                      ____________________________________________________________
consensus             CTGGGCGCACTGTTCTCCTTGGCACCCTGCTTCTTTCTAGTGGTGTTGAGCTTGCAAGAA
 
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JMSF028H16+           AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
JMSF001K15+           AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
                      ____________________________________________________________
consensus             AGGGTGAAGGAGAAATTTTGGCCCTTGTCCCTGTAAACACCATAGATTCTTGAATTGCGG
 
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JMSF028H16+           AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
JMSF001K15+           AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
                      ____________________________________________________________
consensus             AGTGAAAAATGAGGTATGAAAGTGAAGTTTAGTTTTGGGTTTTGCAGTTGAGCCAATCTT
 
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JMSF028H16+           AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC
JMSF001K15+           AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC
                      ____________________________________________________________
consensus             AAAGGCCTAGTGCTAAGATTCATGATCGCCATTGAACTGACAGAGGTTAGTTTATCCACC