Contig 006329:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022J01Sequence359006329 (3)ref|XP_004242662.1|2e-34PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu664008225 (2)ref|XP_006360251.1|3e-83PREDICTED: probable cyclic nucleotide-gated ion channel 17-like, partial [Solan
JMFF022O03Sequence543006329 (3)ref|XP_004242662.1|1e-72PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu689008225 (2)ref|XP_006360251.1|6e-47PREDICTED: probable cyclic nucleotide-gated ion channel 17-like, partial [Solan
JMFS160C06Sequence565006329 (3)ref|XP_004242662.1|2e-41PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Solanum lycopersicu

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022O03+                       CTCCGAGCAATCTCCTTAGGATCCATGACAAGCTCACCTCTACCAAAT
                      ____________________________________________________________
consensus                         CTCCGAGCAATCTCCTTAGGATCCATGACAAGCTCACCTCTACCAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022O03+           ACCCGAGTATTGGGGGCAACATAAGCAGTTCTAAACTTAATGATCACGTGCAACAGATAG
                      ____________________________________________________________
consensus             ACCCGAGTATTGGGGGCAACATAAGCAGTTCTAAACTTAATGATCACGTGCAACAGATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022O03+           AAAAAATCAGCAATAGTGCGGAAAATTGTGACCACAATTCGCAAATTCAAGTCAGTCCTC
JMFS160C06+                                              AATTCGCAAATTCAAGTCAGTCCTC
                      ____________________________________________________________
consensus             AAAAAATCAGCAATAGTGCGGAAAATTGTGACCACAATTCGCAAATTCAAGTCAGTCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+                           TAGTTCCTCCAATAATAGGCATAAAAAAATACAATGGGTCGACA
JMFF022O03+           ACACAACTTAGATCCTTAGTTCCTCCAATAATAGGCATAAAAAAATACAATGGGTCGACA
JMFS160C06+           ACACAACTTAGATCCTTAGTTCCTCCAATAATAGGCATAAAAAAATACAATGGGTCGACA
                      ____________________________________________________________
consensus             ACACAACTTAGATCCTTAGTTCCTCCAATAATAGGCATAAAAAAATACAATGGGTCGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+           AACAATGCCAACAAGCAAGATATAATGAAAACCCAATTCCACTTCAGCACAATGTCACTA
JMFF022O03+           AACAATGCCAACAAGCAAGATATAATGAAAACCCAATTCCACTTCAGCACAATGTCACTA
JMFS160C06+           AACAATGCCAACAAGCAAGATATAATGAAAACCCAATTCCACTTCAGCACAATGTCACTA
                      ____________________________________________________________
consensus             AACAATGCCAACAAGCAAGATATAATGAAAACCCAATTCCACTTCAGCACAATGTCACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+           CCCGGATCAAGAATCCGCTTTCTCCATGGCTCATGGTTCTCAGGGTACACCTTAGGCCTC
JMFF022O03+           CCCGGATCAAGAATCCGCTTTCTCCATGGCTCATGGTTCTCAGGGTACACCTTAGGCCTC
JMFS160C06+           CCCGGATCAAGAATCCGCTTTCTCCATGGCTCATGGTTCTCAGGGTACACCTTAGGCCTC
                      ____________________________________________________________
consensus             CCCGGATCAAGAATCCGCTTTCTCCATGGCTCATGGTTCTCAGGGTACACCTTAGGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+           CCAAACTTAAGGGTTTCTGTGATTTTATGTTTTCTGCCGGGGTTCAACCAGGATGATGAA
JMFF022O03+           CCAAACTTAAGGGTTTCTGTGATTTTATGTTTTCTGCCGGGGTTCAACCAGGATGATGAA
JMFS160C06+           CCAAACTTAAGGGTTTCTGTGATTTTATGTTTTCTGCCGGGGTTCAACCAGGATGATGAA
                      ____________________________________________________________
consensus             CCAAACTTAAGGGTTTCTGTGATTTTATGTTTTCTGCCGGGGTTCAACCAGGATGATGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+           AACCTATACTCAGAAGATGATTTCTCTAAACTTGAAGATTCAGCTTCTCCTCCCCATAAA
JMFF022O03+           AACCTATACTCAGAAGATGATTTCTCTAAACTTGAAGATTCAGCTTCTCCTCCCCATAAA
JMFS160C06+           AACCTATACTCAGAAGATGATTTCTCTAAACTTGAAGATTCAGCTTCTCCTCCCCATAAA
                      ____________________________________________________________
consensus             AACCTATACTCAGAAGATGATTTCTCTAAACTTGAAGATTCAGCTTCTCCTCCCCATAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+           ATGGGTTTTTGCTGTTTTCCGTTGGAGTAGAACCTCACAAACTTCTCTTTCTTCATGTCC
JMFF022O03+           ATGGGTTTTTGCTGTTTTCCGTTGGAGTAGAACCTCACAAACTTCTCTTTCTTCATGTCC
JMFS160C06+           ATGGGTTTTTGCTGTTTTCCGTTGGAGTAGAACCTCACAAACTTCTCTTTCTTCATGTCC
                      ____________________________________________________________
consensus             ATGGGTTTTTGCTGTTTTCCGTTGGAGTAGAACCTCACAAACTTCTCTTTCTTCATGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF022J01+           AACCCCGTGTGAAAT                                             
JMFF022O03+           AACCCCGTGTGAAAT                                             
JMFS160C06+           AACCCCGTGTGAAATGGGTTTTGGAAAAGTCTGCAGGCAGCTAAAGAGAAAGAGAAACTG
                      ____________________________________________________________
consensus             AACCCCGTGTGAAATGGGTTTTGGAAAAGTCTGCAGGCAGCTAAAGAGAAAGAGAAACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160C06+           ACGGAAGGTAAAATACCTATAGTGCCCTTTAATCATAAACTACAAGCGAAACATTCTTGG
                      ____________________________________________________________
consensus             ACGGAAGGTAAAATACCTATAGTGCCCTTTAATCATAAACTACAAGCGAAACATTCTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160C06+           TTGTGTTAAGGAAACTTTTTTTTTTCCCAGATTTGCAGGGAGAAGGCAGAGTGACAGTGA
                      ____________________________________________________________
consensus             TTGTGTTAAGGAAACTTTTTTTTTTCCCAGATTTGCAGGGAGAAGGCAGAGTGACAGTGA