Contig 006326:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036E20Sequence567006326 (5)ref|XP_011087626.1|1e-29PREDICTED: auxin response factor 1-like [Sesamum indicum]659018045ref|NP_001234871.1|7e-24auxin response factor 1 [Solanum lycopersicum] gb|ADJ10892.1| auxin response fac
JMFF037K03Sequence578006326 (5)gb|EYU35034.1|2e-27hypothetical protein MIMGU_mgv1a003127mg [Erythranthe guttata]697014896ref|XP_006349280.1|5e-53PREDICTED: auxin response factor 1-like isoform X1 [Solanum tuberosum] ref|XP_00
JMFS157D02Sequence629006326 (5)ref|XP_006342511.1|3e-04PREDICTED: poly(A) polymerase-like [Solanum tuberosum]
JMSF033B22Sequence682006326 (5)ref|NP_001234871.1|3e-15auxin response factor 1 [Solanum lycopersicum] gb|ADJ10892.1| auxin response fac625006326 (5)ref|XP_010323707.1|1e-22PREDICTED: auxin response factor 1 isoform X1 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF033B22-                  GATGGCTTCTAAATCTTACAATTGCACACATACACTAAAGAAAGCAATGAAA
                      ____________________________________________________________
consensus                     GATGGCTTCTAAATCTTACAATTGCACACATACACTAAAGAAAGCAATGAAA
 
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rJMSF033B22-          TTAAGCAGGCAAGTGAAGCTACTCACAGATAATTAATCAAAATCATGTCATTGATGGAAT
                      ____________________________________________________________
consensus             TTAAGCAGGCAAGTGAAGCTACTCACAGATAATTAATCAAAATCATGTCATTGATGGAAT
 
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rJMSF033B22-          AAGGAAGACTTCCGCTTAAATTATTATATGCAAGATTCCGTAAGCCAGGTGGTTAACCAT
                      ____________________________________________________________
consensus             AAGGAAGACTTCCGCTTAAATTATTATATGCAAGATTCCGTAAGCCAGGTGGTTAACCAT
 
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rJMSF033B22-          TGGACCATAAGAGAGTTTAGGTGATGGGAAGAGATCTGTCCCACGGGATGTATCACAATA
JMSF033B22+                                                       GGGATGTATCACAATA
                      ____________________________________________________________
consensus             TGGACCATAAGAGAGTTTAGGTGATGGGAAGAGATCTGTCCCACGGGATGTATCACAATA
 
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rJMSF033B22-          TGAGAACGATAGGGGAGAATCAACAGGTGATTTCCATGTCCCTAGCGCAGAAAATTCAGA
JMSF033B22+           TGAGAACGATAGGGGAGAATCAACAGGTGATTTCCATGTCCCTAGCGCAGAAAATTCAGA
                      ____________________________________________________________
consensus             TGAGAACGATAGGGGAGAATCAACAGGTGATTTCCATGTCCCTAGCGCAGAAAATTCAGA
 
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rJMSF033B22-          TACCGATGGACGTAAATTTGCTGGGTGTGCACGCTTGTTCCTTTGTGGAGGCTGGAGCGT
JMSF033B22+           TACCGATGGACGTAAATTTGCTGGGTGTGCACGCTTGTTCCTTTGTGGAGGCTGGAGCGT
                      ____________________________________________________________
consensus             TACCGATGGACGTAAATTTGCTGGGTGTGCACGCTTGTTCCTTTGTGGAGGCTGGAGCGT
 
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rJMSF033B22-          TTGAGGTGTCGAAGTGACAAGTGCTTCTATCTCCCATGGTGAAACCCGTAACTCTTTCAG
JMSF033B22+           TTGAGGTGTCGAAGTGACAAGTGCTTCTATCTCCCATGGTGAAACCCGTAACTCTTTCAG
                      ____________________________________________________________
consensus             TTGAGGTGTCGAAGTGACAAGTGCTTCTATCTCCCATGGTGAAACCCGTAACTCTTTCAG
 
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rJMSF033B22-          CATATAATGGATTGCCAGCAAGGGTTCTGATTCTACCATTTGTTTGTGGTAGGCTTTCTG
JMFF037K03+                         CCAGCAAGGGTTCTGATTCTACCATTTGTTTGTGGTATGCTTTCTG
JMFF036E20+                         CCAGCAAGGGTTCTGATTCTACCATTTGTTTGTGGTATGCTTTCTG
JMSF033B22+           CATATAATGGATTGCCAGCAAGGGTTCTGATTCTACCATTTGTTTGTGGTAGGCTTTCTG
                      ____________________________________________________________
consensus             CATATAATGGATTGCCAGCAAGGGTTCTGATTCTACCATTTGTTTGTGGTAGGCTTTCTG
 
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rJMSF033B22-          TTAGTGAACCGTTAGATTTCTGGGATGAACCATTAGCACTCTGAGAAACATGGAGCCTTC
JMFF037K03+           TTAGTGAACCGTTAGATTTCTAGGATGAACCATTAGCACTCTGAGAAACATGGAGCCTTC
JMFF036E20+           TTAGTGAACCGTTAGATTTCTAGGATGAACCATTAGCACTCTGAGAAACATGGAGCCTTC
JMSF033B22+           TTAGTGAACCGTTAGATTTCTGGGATGAACCATTAGCACTCTGAGAAACATGGAGCCTTC
                      ____________________________________________________________
consensus             TTAGTGAACCGTTAGATTTCTGGGATGAACCATTAGCACTCTGAGAAACATGGAGCCTTC
 
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rJMSF033B22-          CTCTATCGCCGTCGAAATGATGCATGTATGGCTTTCCTGGTTTCAATTCAACTCCTTTTT
JMFF037K03+           CTCTATCGCCGTCGAAATGATGAGTGTATGGCTTTCCTGGTTTCAATTCAACTCTTTTTT
JMFF036E20+           CTCTATCGCCGTCGAAATGATGAGTGTATGGCTTTCCTGGTTTCAATTCAACTCTTTTTT
JMSF033B22+           CTCTATCGCCGTCGAAATGATGCATGTATGGCTTTCCTGGTTTCAATTCAACTCCTTTTT
                      ____________________________________________________________
consensus             CTCTATCGCCGTCGAAATGATGCATGTATGGCTTTCCTGGTTTCAATTCAACTCCTTTTT
 
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JMFF037K03+           GGAGAGCGTACA                                                
JMSF033B22+           GGAGAGCGTACAGCGGCGTCCGTACTGCGATGGCGAGCTGAGCTTGTAGAGCGGAGGCGT
                      ____________________________________________________________
consensus             GGAGAGCGTACAGCGGCGTCCGTACTGCGATGGCGAGCTGAGCTTGTAGAGCGGAGGCGT
 
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JMSF033B22+           CGCGGCGGCGACCTTGGGCGGCAGTGGCGGGGACGTCGATCGGCAGTGGCGGGGACGTAG
                      ____________________________________________________________
consensus             CGCGGCGGCGACCTTGGGCGGCAGTGGCGGGGACGTCGATCGGCAGTGGCGGGGACGTAG
 
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JMSF033B22+           ATCGGCGATGGAAGACGGAATGGTGATGGACGGGAAGATGGAGAGCGTGGACGGCGAGGA
JMFS157D02-                                   GATGGACGGGAAGATGGAGAGCGTGGACGGCGGGGA
                      ____________________________________________________________
consensus             ATCGGCGATGGAAGACGGAATGGTGATGGACGGGAAGATGGAGAGCGTGGACGGCGGGGA
 
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JMSF033B22+           TGATGGAGACTGATGGACGGCGTCGGACGGCGGAGACTGATGGACGGCGTCGGA      
JMFS157D02-           CGATGGAGAGTG-TGGACGGCGTCGGACGGCGGTGACTGATGGACGGCGTCGGAGCAGAG
                      ____________________________________________________________
consensus             TGATGGAGAGTGATGGACGGCGTCGGACGGCGGTGACTGATGGACGGCGTCGGAGCAGAG
 
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JMFS157D02-           CTGATGGAGATGGACGGCGTCAGACGCGATCTGATACAGAGCTGAATGATACAGATCGAG
                      ____________________________________________________________
consensus             CTGATGGAGATGGACGGCGTCAGACGCGATCTGATACAGAGCTGAATGATACAGATCGAG
 
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JMFS157D02-           CTAGGGATTTAGGATAAAAAAAAATCGCGTCCAAAGTGGCCACTTTGGACGCGATTGATT
                      ____________________________________________________________
consensus             CTAGGGATTTAGGATAAAAAAAAATCGCGTCCAAAGTGGCCACTTTGGACGCGATTGATT
 
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JMFS157D02-           AATATTCGCGTCCAAAGTACTGAGATTTGGACGCGAATAATAGAAGACTTTTAGTATTGG
                      ____________________________________________________________
consensus             AATATTCGCGTCCAAAGTACTGAGATTTGGACGCGAATAATAGAAGACTTTTAGTATTGG
 
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JMFS157D02-           CGTCCAAAGTACAGAGATTTGGACGCCAATACTGTTTTAAAATTAAAAAAAAAAAATTAT
                      ____________________________________________________________
consensus             CGTCCAAAGTACAGAGATTTGGACGCCAATACTGTTTTAAAATTAAAAAAAAAAAATTAT
 
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JMFS157D02-           TTATATAGTGGCATTTTAATTACAAAAATGCCACCGCATTACACTTTANGCATCCAAAGT
                      ____________________________________________________________
consensus             TTATATAGTGGCATTTTAATTACAAAAATGCCACCGCATTACACTTTANGCATCCAAAGT