Contig 006316:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS065A06Sequence613006316 (3)ref|XP_009762502.1|1e-106PREDICTED: probable helicase DDB_G0274399 [Nicotiana sylvestris]
JMFS143D01Sequence625006316 (3)ref|XP_009592502.1|2e-107PREDICTED: uncharacterized ATP-dependent helicase C29A10.10c [Nicotiana tomento
JMSF015A23Sequence252017796732006316 (3)emb|CDP01026.1|4e-57unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF015A23-                                       TAGCTTTCATGGTGTACTTTCAGACCCTAGC
                      ____________________________________________________________
consensus                                          TAGCTTTCATGGTGTACTTTCAGACCCTAGC
 
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rJMSF015A23-          TTTCACGAGACTTTTTATATATAATATGTGATTTCATGTGATTTTTTGTTCTTACGAACC
                      ____________________________________________________________
consensus             TTTCACGAGACTTTTTATATATAATATGTGATTTCATGTGATTTTTTGTTCTTACGAACC
 
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rJMSF015A23-          TCATCTGCTGTTTGGCTCTTGCCTCCTCTTACGAAATGCATCTCTGTTCTCAACTACTGC
                      ____________________________________________________________
consensus             TCATCTGCTGTTTGGCTCTTGCCTCCTCTTACGAAATGCATCTCTGTTCTCAACTACTGC
 
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rJMSF015A23-          TGCAAGGTTCTGCAGCAAAGAGCTCAATTTTGGTCCCTTGCCATGAGAACATCAGGGTCA
                      ____________________________________________________________
consensus             TGCAAGGTTCTGCAGCAAAGAGCTCAATTTTGGTCCCTTGCCATGAGAACATCAGGGTCA
 
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rJMSF015A23-          ACACCAACAGATCCTTGTGCCCTATACCAGCAGCAGCAGCAACACCAACTCACCTACTTC
JMFS065A06+                                                                  ACTTC
                      ____________________________________________________________
consensus             ACACCAACAGATCCTTGTGCCCTATACCAGCAGCAGCAGCAACACCAACTCACCTACTTC
 
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rJMSF015A23-          ATCACGACTCTTCATTAAAAGCAGTTTGGCTCTTCTTTCTACAGAAACTGCTTGAGCAGC
JMFS065A06+           ATCACGACTCTTCATTAAAAGCAGTTCGGTTCTTCTTTCTACAGAAACTGCTTGAGCAGC
                      ____________________________________________________________
consensus             ATCACGACTCTTCATTAAAAGCAGTTTGGTTCTTCTTTCTACAGAAACTGCTTGAGCAGC
 
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rJMSF015A23-          CCTAGTCTGGGGCTACCCCAACTCCCATGGCAACATCAGGACGATAAACTTTCATCTCAC
JMFS065A06+           CCTAGTCTGGGAGT-CCACCCCAACCCTGGCAACATCAGGACGATAAACTTTCATCTCAC
                      ____________________________________________________________
consensus             CCTAGTCTGGGGGTACCCCCCCTCCCCTGGCAACATCAGGACGATAAACTTTCATCTCAC
 
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rJMSF015A23-          CATCTAT-AATCCACGATCAAGAACACGTGCAAGCAACTCATCAGTAGCAGCATTTGAAG
JMFS065A06+           CATCAATAAATCCACGATCAAGAACACGTGCAAGCAACTCATCAGTAGCAGCATTTGAAG
                      ____________________________________________________________
consensus             CATCTATAAATCCACGATCAAGAACACGTGCAAGCAACTCATCAGTAGCAGCATTTGAAG
 
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rJMSF015A23-          GAGCACAGACAAGCATCCTAGGTTTTGGGCAAAGTTTAGGGAGAGTGCGAAATATATTTT
JMFS065A06+           GAGCACAGACAAGCATCCTAGGTTTTGGGCAAAGTTTAGGGAGAGTGCGAAATAGATTTT
                      ____________________________________________________________
consensus             GAGCACAGACAAGCATCCTAGGTTTTGGGCAAAGTTTAGGGAGAGTGCGAAATATATTTT
 
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rJMSF015A23-          GATCCATGCTTAGGAGGACTTCATCAATAGATCCAGAGGCAACATTATCCAAGTTACTCT
JMFS065A06+           GATCCATGCTTAGGAGGACTTCATCAATAGATCCAGAGGCAACATTATCCAAGTTACTCT
                      ____________________________________________________________
consensus             GATCCATGCTTAGGAGGACTTCATCAATAGATCCAGAGGCAACATTATCCAAGTTACTCT
 
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rJMSF015A23-          CATTATTCTGCTTATAGCTTTCAGGTGCCAATTTCTTCAGAAGTGCAGTATAGTAGTGCT
JMFS065A06+           CATTATTCTGCTTATAGCTTTCAGGTGCCAATTTCTTCAGAAGTGCAGTATAGTAGTGCT
                      ____________________________________________________________
consensus             CATTATTCTGCTTATAGCTTTCAGGTGCCAATTTCTTCAGAAGTGCAGTATAGTAGTGCT
 
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rJMSF015A23-          GATACTGAACAAGATGTAT                                         
JMFS065A06+           GATACTGAACAAGATGTATCACATTTAGCATTCCCCAGACAGTATGTGTCTTACCTGTAC
JMFS143D01+                                              CAGACAGTATGTGTCTTACCTGTAC
                      ____________________________________________________________
consensus             GATACTGAACAAGATGTATCACATTTAGCATTCCCCAGACAGTATGTGTCTTACCTGTAC
 
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JMFS065A06+           CAGGGGGGCCTTGTACCAGGGTGAA                                   
JMFS143D01+           CAGGGGGGCCTTGTACCAGGGTGAAAGGCCATGGGTCTTGCCTCTTTGCAATCCCATTAG
                      ____________________________________________________________
consensus             CAGGGGGGCCTTGTACCAGGGTGAAAGGCCATGGGTCTTGCCTCTTTGCAATCCCATTAG
 
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JMFS143D01+           TCCCAGCAGCTGTATGTGTTGCAGCCCACTGGATTGCTGCTAACTGGGGGGTATTAAAAG
                      ____________________________________________________________
consensus             TCCCAGCAGCTGTATGTGTTGCAGCCCACTGGATTGCTGCTAACTGGGGGGTATTAAAAG
 
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JMFS143D01+           TCCTGTGCAAGTACTCAACAAAGTTTGGTGTGAAGCAGTCAGGCATTGCAGGTGTCTGCT
                      ____________________________________________________________
consensus             TCCTGTGCAAGTACTCAACAAAGTTTGGTGTGAAGCAGTCAGGCATTGCAGGTGTCTGCT
 
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JMFS143D01+           CCTCATATTTGGGGAAATGCTCAGAACTAGGTTGGAGAATAGCATTTTGCATCTGTGAAT
                      ____________________________________________________________
consensus             CCTCATATTTGGGGAAATGCTCAGAACTAGGTTGGAGAATAGCATTTTGCATCTGTGAAT
 
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JMFS143D01+           TAAGCCGGCGGAATGCATGCAGAGCAACATACTCTCTTTGGGTGGTTGCAAGAGAGCCCA
                      ____________________________________________________________
consensus             TAAGCCGGCGGAATGCATGCAGAGCAACATACTCTCTTTGGGTGGTTGCAAGAGAGCCCA
 
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JMFS143D01+           GCACAGTCAGAAACCAGGTGCCCCTTGGTTGTAATTTCCTCAGAATATTGTCATCATCAA
                      ____________________________________________________________
consensus             GCACAGTCAGAAACCAGGTGCCCCTTGGTTGTAATTTCCTCAGAATATTGTCATCATCAA
 
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JMFS143D01+           TCTTGCTGTTGTCATAAGAATCCCCAACATAGAAGTGGAGGATTGCCCCAGGAGGGTCCC
                      ____________________________________________________________
consensus             TCTTGCTGTTGTCATAAGAATCCCCAACATAGAAGTGGAGGATTGCCCCAGGAGGGTCCC
 
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JMFS143D01+           TTTTATCAATAGGTATATGCCGCCTTACTGTCCCAGCCACACGACCATTTATCTCGGGCT
                      ____________________________________________________________
consensus             TTTTATCAATAGGTATATGCCGCCTTACTGTCCCAGCCACACGACCATTTATCTCGGGCT
 
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JMFS143D01+           CTTCATCAACTCCAAAGCCTCTTCGCAATCTGACTGCTGATCCAGGTCGAGGAGTGGAAA
                      ____________________________________________________________
consensus             CTTCATCAACTCCAAAGCCTCTTCGCAATCTGACTGCTGATCCAGGTCGAGGAGTGGAAA
 
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JMFS143D01+           GAACTGCAACATCTCCCTCTTTGAATGTCCATTTGTACTCACTTTCTGGAAGAAGTATCA
                      ____________________________________________________________
consensus             GAACTGCAACATCTCCCTCTTTGAATGTCCATTTGTACTCACTTTCTGGAAGAAGTATCA