Contig 006315:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS089E12Sequence622006315 (2)ref|XP_009786390.1|7e-83PREDICTED: chromosome transmission fidelity protein 18 homolog isoform X2 [Nico
JMFS143C01Sequence639006315 (2)ref|XP_004247840.1|7e-22PREDICTED: chromosome transmission fidelity protein 18 homolog isoform X1 [Sola

Alignment

This contig is upended


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JMFS089E12+                         CAAGTGTTGTTTTCCCAAGCCCAGGAGGACCACAAAGTAGAAGAAT
                      ____________________________________________________________
consensus                           CAAGTGTTGTTTTCCCAAGCCCAGGAGGACCACAAAGTAGAAGAAT
 
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JMFS089E12+           CTTCTGTTCAGGTGGGCCAGATTGTCTACCTTTCTTCTCCCCCAGGTCCTTAATATCTTT
                      ____________________________________________________________
consensus             CTTCTGTTCAGGTGGGCCAGATTGTCTACCTTTCTTCTCCCCCAGGTCCTTAATATCTTT
 
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JMFS089E12+           TGAGTTACCATTCTCTTCAAATGGATAATTATGAGATCCATCTTTGCTGAACACAGATTC
                      ____________________________________________________________
consensus             TGAGTTACCATTCTCTTCAAATGGATAATTATGAGATCCATCTTTGCTGAACACAGATTC
 
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JMFS089E12+           TCTATTAGTTCCAAAAGTCTTACTAGCGGAATATTTTGGGCGTTTAACTAATGAATGGCG
                      ____________________________________________________________
consensus             TCTATTAGTTCCAAAAGTCTTACTAGCGGAATATTTTGGGCGTTTAACTAATGAATGGCG
 
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JMFS089E12+           TCTCAAAGCAGACAAGACATGATCCTCTGTACTCTTAATTTCAGATCCATAAACACTTGA
                      ____________________________________________________________
consensus             TCTCAAAGCAGACAAGACATGATCCTCTGTACTCTTAATTTCAGATCCATAAACACTTGA
 
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JMFS089E12+           ATCCCACTGTTTCAACCACATAAGAACCTCTCGATTTGTGTGCTCATTACTAAGAAGTTC
                      ____________________________________________________________
consensus             ATCCCACTGTTTCAACCACATAAGAACCTCTCGATTTGTGTGCTCATTACTAAGAAGTTC
 
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JMFS089E12+           TGTAAATGAACTTGGAGCATATTTTTCCACCCAAAGTTGCTCAGTTGTTAACGTTGCTTT
                      ____________________________________________________________
consensus             TGTAAATGAACTTGGAGCATATTTTTCCACCCAAAGTTGCTCAGTTGTTAACGTTGCTTT
 
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JMFS089E12+           TGGAGGAGTTGTCTCAATTTGATCTTCAGAACTAGCTTCCAATGCCTTTGTAAATTCATC
                      ____________________________________________________________
consensus             TGGAGGAGTTGTCTCAATTTGATCTTCAGAACTAGCTTCCAATGCCTTTGTAAATTCATC
 
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JMFS089E12+           CTGTTCCACTCTTTCCATAAGAACCCTGACAGGTTCCAAAATAAGACCATTAGATTCACC
JMFS143C01+                                AACCCTGACAGGTTCCAAAATAAGACCATTAGATTCACC
                      ____________________________________________________________
consensus             CTGTTCCACTCTTTCCATAAGAACCCTGACAGGTTCCAAAATAAGACCATTAGATTCACC
 
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JMFS089E12+           CTTTGTGCTCAGCTTCGTGATCCTCTCTCTCATATGAGCTCTGCAAATCTTTGCATAAAC
JMFS143C01+           CTTTGTGCTCAGCTTCGTGATCCTCTCTCTCATATGAGCTCTGCAAATCTTTGCATAAAC
                      ____________________________________________________________
consensus             CTTTGTGCTCAGCTTCGTGATCCTCTCTCTCATATGAGCTCTGCAAATCTTTGCATAAAC
 
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JMFS089E12+           CCTCTCCCCATCCAACCCCGTGACCGGTACGCAATC                        
JMFS143C01+           CCTCTCCCCATCCAACCCCGTGACCGGTACGCAATCCCCGTCAATCTCCATAGCGTACCT
                      ____________________________________________________________
consensus             CCTCTCCCCATCCAACCCCGTGACCGGTACGCAATCCCCGTCAATCTCCATAGCGTACCT
 
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JMFS143C01+           CGACAAAATCTTTTCCTTCTCCTCCTCCTCCTCTCTCTCCACCACCTCGACCGCCGGAGC
                      ____________________________________________________________
consensus             CGACAAAATCTTTTCCTTCTCCTCCTCCTCCTCTCTCTCCACCACCTCGACCGCCGGAGC
 
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JMFS143C01+           AGGCGGCGGCGAGTACCGGAGCCAGTCCTCATCCTCTCCACTTTCCACTCTGCTTCGTTT
                      ____________________________________________________________
consensus             AGGCGGCGGCGAGTACCGGAGCCAGTCCTCATCCTCTCCACTTTCCACTCTGCTTCGTTT
 
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JMFS143C01+           CTCCTCAACGGATGCCGCATCTCCGGCACCCGCCGGGACCGGGTCGGGCCGGAATCGTTT
                      ____________________________________________________________
consensus             CTCCTCAACGGATGCCGCATCTCCGGCACCCGCCGGGACCGGGTCGGGCCGGAATCGTTT
 
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JMFS143C01+           CTTTGTCTGGTTGGGGAGGGATGATGATGGCTTAGGCGGGATTAAGAGAGCGGGTTTTGG
                      ____________________________________________________________
consensus             CTTTGTCTGGTTGGGGAGGGATGATGATGGCTTAGGCGGGATTAAGAGAGCGGGTTTTGG
 
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JMFS143C01+           GGGTAATTGAAGTGAGGGGTTTCTGGGTACGGGAGGGTCAACGCCTTTTGCGGTTTCTGG
                      ____________________________________________________________
consensus             GGGTAATTGAAGTGAGGGGTTTCTGGGTACGGGAGGGTCAACGCCTTTTGCGGTTTCTGG
 
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JMFS143C01+           GTTCGGGATTTCTTCTTCTTCAGGCTCCGATGGCGGGGATGGGGGTTGCTGGAAATCGTC
                      ____________________________________________________________
consensus             GTTCGGGATTTCTTCTTCTTCAGGCTCCGATGGCGGGGATGGGGGTTGCTGGAAATCGTC
 
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JMFS143C01+           GTCGAACTCGAGGTCGTCGTGGAGGTGGTACGAGTTCGATTCGAGCCATTCGAGCTCGGA
                      ____________________________________________________________
consensus             GTCGAACTCGAGGTCGTCGTGGAGGTGGTACGAGTTCGATTCGAGCCATTCGAGCTCGGA
 
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JMFS143C01+           GGGATCGGGAATGTCCGTATCCATATCCATTTCCATCGTCTCAGCAATTCTCGATGGAAG
                      ____________________________________________________________
consensus             GGGATCGGGAATGTCCGTATCCATATCCATTTCCATCGTCTCAGCAATTCTCGATGGAAG