Contig 006312:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS040G05Sequence619006312 (4)ref|XP_006371646.1|8e-41hypothetical protein POPTR_0019s14220g, partial [Populus trichocarpa] gb|ERP4944
JMFS141B05Sequence619006312 (4)ref|XP_006371646.1|3e-40hypothetical protein POPTR_0019s14220g, partial [Populus trichocarpa] gb|ERP4944
JMFS155A04Sequence600006312 (4)ref|XP_010657373.1|4e-44PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03
JMSF047J22Sequence696006312 (4)ref|XP_008368520.1|5e-51PREDICTED: LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-692014015 (2)ref|XP_009796863.1|3e-92PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03

Alignment

This contig is upended


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JMSF047J22+                                                                  ACTTT
                      ____________________________________________________________
consensus                                                                    ACTTT
 
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JMFS155A04+                                                                   TGGA
JMSF047J22+           TCCAGTATGTTACAGATCTGTGATAGATGATGTACTGTTCCTTGTCTCCTGGATCTTGGA
                      ____________________________________________________________
consensus             TCCAGTATGTTACAGATCTGTGATAGATGATGTACTGTTCCTTGTCTCCTGGATCTTGGA
 
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JMFS155A04+           TGAAGGTGTAATTTCCAGGCGTGNGGTTGTAGCCAGAACTTGCCCAGGAAGTCAGTGTTA
JMSF047J22+           TGAAGGTGTAATTTCCAGGCGTGGGGTTGTAGCCAGAACTTGCCCAGGAAGTCAGTGTTA
JMFS040G05+                                                    GCCCAGGAAGTCAGTGTTA
JMFS141B05+                                                    GCCCAGGAAGTCAGTGTTA
                      ____________________________________________________________
consensus             TGAAGGTGTAATTTCCAGGCGTGGGGTTGTAGCCAGAACTTGCCCAGGAAGTCAGTGTTA
 
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JMFS155A04+           AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTTGCC
JMSF047J22+           AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTTGCC
JMFS040G05+           AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTATGCC
JMFS141B05+           AACTCTCATCCATTTTCATCNCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTGNCC
                      ____________________________________________________________
consensus             AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTTGCC
 
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JMFS155A04+           ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
JMSF047J22+           ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
JMFS040G05+           ATANAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
JMFS141B05+           ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
                      ____________________________________________________________
consensus             ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
 
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JMFS155A04+           CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
JMSF047J22+           CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
JMFS040G05+           CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
JMFS141B05+           CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
                      ____________________________________________________________
consensus             CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
 
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JMFS155A04+           TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
JMSF047J22+           TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
JMFS040G05+           TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
JMFS141B05+           TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
                      ____________________________________________________________
consensus             TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
 
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JMFS155A04+           CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
JMSF047J22+           CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
JMFS040G05+           CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
JMFS141B05+           CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
                      ____________________________________________________________
consensus             CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
 
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JMFS155A04+           ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
JMSF047J22+           ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
JMFS040G05+           ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
JMFS141B05+           ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
                      ____________________________________________________________
consensus             ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
 
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JMFS155A04+           GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
JMSF047J22+           GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
JMFS040G05+           GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
JMFS141B05+           GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
                      ____________________________________________________________
consensus             GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
 
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JMFS155A04+           TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
JMSF047J22+           TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
JMFS040G05+           TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
JMFS141B05+           TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
                      ____________________________________________________________
consensus             TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
 
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JMFS155A04+           GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCAT    
JMSF047J22+           GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
JMFS040G05+           GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
JMFS141B05+           GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
                      ____________________________________________________________
consensus             GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
 
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JMSF047J22+           TTTGATGATAACAAGTCTTCGATCCCGAAT                              
JMFS040G05+           TTTGATGATAACAAGTCTTCGATCCCGAATGAAGTCAACACTAACTTACAGACTAGACAA
JMFS141B05+           TTTGATGATAACAAGTCTTCGATCCCGAATGAAGTCAACACTAACTTACAGACTAGACAA
                      ____________________________________________________________
consensus             TTTGATGATAACAAGTCTTCGATCCCGAATGAAGTCAACACTAACTTACAGACTAGACAA