Contig 006312:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS040G05Sequence619006312 (4)ref|XP_006371646.1|8e-41hypothetical protein POPTR_0019s14220g, partial [Populus trichocarpa] gb|ERP4944
JMFS141B05Sequence619006312 (4)ref|XP_006371646.1|3e-40hypothetical protein POPTR_0019s14220g, partial [Populus trichocarpa] gb|ERP4944
JMFS155A04Sequence600006312 (4)ref|XP_010657373.1|4e-44PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03
JMSF047J22Sequence696006312 (4)ref|XP_008368520.1|5e-51PREDICTED: LOW QUALITY PROTEIN: G-type lectin S-receptor-like serine/threonine-692014015 (2)ref|XP_009796863.1|3e-92PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047J22+ ACTTT
                      ____________________________________________________________
consensus ACTTT
 
. : . : . : . : . : . :
JMFS155A04+ TGGA
JMSF047J22+ TCCAGTATGTTACAGATCTGTGATAGATGATGTACTGTTCCTTGTCTCCTGGATCTTGGA
                      ____________________________________________________________
consensus TCCAGTATGTTACAGATCTGTGATAGATGATGTACTGTTCCTTGTCTCCTGGATCTTGGA
 
. : . : . : . : . : . :
JMFS155A04+ TGAAGGTGTAATTTCCAGGCGTGNGGTTGTAGCCAGAACTTGCCCAGGAAGTCAGTGTTA
JMSF047J22+ TGAAGGTGTAATTTCCAGGCGTGGGGTTGTAGCCAGAACTTGCCCAGGAAGTCAGTGTTA
JMFS040G05+ GCCCAGGAAGTCAGTGTTA
JMFS141B05+ GCCCAGGAAGTCAGTGTTA
                      ____________________________________________________________
consensus TGAAGGTGTAATTTCCAGGCGTGGGGTTGTAGCCAGAACTTGCCCAGGAAGTCAGTGTTA
 
. : . : . : . : . : . :
JMFS155A04+ AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTTGCC
JMSF047J22+ AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTTGCC
JMFS040G05+ AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTATGCC
JMFS141B05+ AACTCTCATCCATTTTCATCNCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTGNCC
                      ____________________________________________________________
consensus AACTCTCATCCATTTTCATCCCAGGAAGAAAAGTATCGGCTGGATGGCCGAAACTTTGCC
 
. : . : . : . : . : . :
JMFS155A04+ ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
JMSF047J22+ ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
JMFS040G05+ ATANAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
JMFS141B05+ ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
                      ____________________________________________________________
consensus ATAAAGTCTTTCCCGAAAGATTATCAATCAGAACTAAATTCCCAGAATCCAAAAGCCTTG
 
. : . : . : . : . : . :
JMFS155A04+ CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
JMSF047J22+ CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
JMFS040G05+ CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
JMFS141B05+ CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
                      ____________________________________________________________
consensus CTGTCCTTGCAGTCCTGTGTGACTTAGAGGGCGTAGGATCAAGTTGTGTGGAGAAACATG
 
. : . : . : . : . : . :
JMFS155A04+ TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
JMSF047J22+ TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
JMFS040G05+ TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
JMFS141B05+ TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
                      ____________________________________________________________
consensus TAGCGCCAGTAGCATTCAGAACATAAAGATTTCCATCTTCTTTAATGGCGACGACAGCCC
 
. : . : . : . : . : . :
JMFS155A04+ CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
JMSF047J22+ CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
JMFS040G05+ CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
JMFS141B05+ CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
                      ____________________________________________________________
consensus CTTCTGGGTCCTGAATTGGAGACTCCCTGTTGGCAACCCAGACAATTGTTTGGGGGTTCA
 
. : . : . : . : . : . :
JMFS155A04+ ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
JMSF047J22+ ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
JMFS040G05+ ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
JMFS141B05+ ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
                      ____________________________________________________________
consensus ACTTGTAATACCAAATGCCTACATAGCAGTTTGAATGTTCTTCATCTAGAAAGAAACCAA
 
. : . : . : . : . : . :
JMFS155A04+ GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
JMSF047J22+ GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
JMFS040G05+ GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
JMFS141B05+ GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
                      ____________________________________________________________
consensus GCTCAAATCTTTTCCCAGCCGAAACAAGTGCGTCACCCTCAGTTAATAAACTGCTTCCGG
 
. : . : . : . : . : . :
JMFS155A04+ TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
JMSF047J22+ TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
JMFS040G05+ TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
JMFS141B05+ TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
                      ____________________________________________________________
consensus TGGTGATTGCGTCTCTACCATGACATGATGGAAGCATAAACATTAAGAAAGCACACAAGA
 
. : . : . : . : . : . :
JMFS155A04+ GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCAT
JMSF047J22+ GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
JMFS040G05+ GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
JMFS141B05+ GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
                      ____________________________________________________________
consensus GCTTGCATATGTACTGCATAGTTGCAGATTAATGATTGAATGTTTGTTGAGACCATGGGA
 
. : . : . : . : . : . :
JMSF047J22+ TTTGATGATAACAAGTCTTCGATCCCGAAT
JMFS040G05+ TTTGATGATAACAAGTCTTCGATCCCGAATGAAGTCAACACTAACTTACAGACTAGACAA
JMFS141B05+ TTTGATGATAACAAGTCTTCGATCCCGAATGAAGTCAACACTAACTTACAGACTAGACAA
                      ____________________________________________________________
consensus TTTGATGATAACAAGTCTTCGATCCCGAATGAAGTCAACACTAACTTACAGACTAGACAA