Contig 006306:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS082H08Sequence606006306 (4)ref|XP_009602318.1|5e-90PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]
JMFS100H02Sequence612006306 (4)ref|XP_009602318.1|8e-77PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]
JMFS134G09Sequence626006306 (4)ref|XP_009602318.1|5e-77PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]
JMSF028C19Sequence675006306 (4)ref|XP_009602318.1|1e-90PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]851007138 (2)

Alignment

This contig is upended


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JMFS082H08+                                  CCAGGTACACTAGCATCAGAGAGAATAACCTTGATTC
JMSF028C19+                               TCACCAGGTACACTAGCATCAGAGAGAATAACCTTGATTC
                      ____________________________________________________________
consensus                                 TCACCAGGTACACTAGCATCAGAGAGAATAACCTTGATTC
 
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JMFS082H08+           CTTTCCAGCCCGGGTCCTCATTCATTCTGGTCTGTACATAGTATTGTAGTGCAGACGACA
JMSF028C19+           CTTTCCAGCCCGGGTCCTCATTCATTCTGGTCTGTACATAGTATTGTAGTGCAGACGACA
JMFS100H02+                                            GTACATAGTATTGTAGTGCAGACGACA
JMFS134G09+                                            GTACATAGTATTGTAGTGCAGACGACA
                      ____________________________________________________________
consensus             CTTTCCAGCCCGGGTCCTCATTCATTCTGGTCTGTACATAGTATTGTAGTGCAGACGACA
 
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JMFS082H08+           GCATAGCCATGAATTGAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
JMSF028C19+           GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
JMFS100H02+           GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
JMFS134G09+           GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
                      ____________________________________________________________
consensus             GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
 
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JMFS082H08+           ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
JMSF028C19+           ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
JMFS100H02+           ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTATGTTCCAGAAGCTGCAT
JMFS134G09+           ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
                      ____________________________________________________________
consensus             ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
 
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JMFS082H08+           CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
JMSF028C19+           CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
JMFS100H02+           CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
JMFS134G09+           CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
                      ____________________________________________________________
consensus             CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
 
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JMFS082H08+           GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
JMSF028C19+           GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
JMFS100H02+           GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
JMFS134G09+           GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
                      ____________________________________________________________
consensus             GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
 
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JMFS082H08+           TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
JMSF028C19+           TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
JMFS100H02+           TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
JMFS134G09+           TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
                      ____________________________________________________________
consensus             TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
 
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JMFS082H08+           CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
JMSF028C19+           CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
JMFS100H02+           CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
JMFS134G09+           CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
                      ____________________________________________________________
consensus             CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
 
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JMFS082H08+           CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
JMSF028C19+           CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
JMFS100H02+           CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
JMFS134G09+           CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
                      ____________________________________________________________
consensus             CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
 
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JMFS082H08+           CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
JMSF028C19+           CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
JMFS100H02+           CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
JMFS134G09+           CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
                      ____________________________________________________________
consensus             CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
 
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JMFS082H08+           AGAACGCAGGTATACCCATCTTGAGAAGC                               
JMSF028C19+           AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGGTTTTGTTGTTCAGAG
JMFS100H02+           AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGGTTTTGTTGTTCAGAG
JMFS134G09+           AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGG-TTTGTTGTTCAGAG
                      ____________________________________________________________
consensus             AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGGTTTTGTTGTTCAGAG
 
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JMSF028C19+           AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCT                          
JMFS100H02+           AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCT                          
JMFS134G09+           AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCTAGGGTTTGCGGACCAGCAAGGGTGGA
                      ____________________________________________________________
consensus             AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCTAGGGTTTGCGGACCAGCAAGGGTGGA