Contig 006306:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS082H08Sequence606006306 (4)ref|XP_009602318.1|5e-90PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]
JMFS100H02Sequence612006306 (4)ref|XP_009602318.1|8e-77PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]
JMFS134G09Sequence626006306 (4)ref|XP_009602318.1|5e-77PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]
JMSF028C19Sequence675006306 (4)ref|XP_009602318.1|1e-90PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Nicotiana tomentosiformis]851007138 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS082H08+ CCAGGTACACTAGCATCAGAGAGAATAACCTTGATTC
JMSF028C19+ TCACCAGGTACACTAGCATCAGAGAGAATAACCTTGATTC
                      ____________________________________________________________
consensus TCACCAGGTACACTAGCATCAGAGAGAATAACCTTGATTC
 
. : . : . : . : . : . :
JMFS082H08+ CTTTCCAGCCCGGGTCCTCATTCATTCTGGTCTGTACATAGTATTGTAGTGCAGACGACA
JMSF028C19+ CTTTCCAGCCCGGGTCCTCATTCATTCTGGTCTGTACATAGTATTGTAGTGCAGACGACA
JMFS100H02+ GTACATAGTATTGTAGTGCAGACGACA
JMFS134G09+ GTACATAGTATTGTAGTGCAGACGACA
                      ____________________________________________________________
consensus CTTTCCAGCCCGGGTCCTCATTCATTCTGGTCTGTACATAGTATTGTAGTGCAGACGACA
 
. : . : . : . : . : . :
JMFS082H08+ GCATAGCCATGAATTGAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
JMSF028C19+ GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
JMFS100H02+ GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
JMFS134G09+ GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
                      ____________________________________________________________
consensus GCATAGCCATGAATTCAGTTCCAGGAGTGATTACATTAGAATCCAGTATTTGAGTATCTG
 
. : . : . : . : . : . :
JMFS082H08+ ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
JMSF028C19+ ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
JMFS100H02+ ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTATGTTCCAGAAGCTGCAT
JMFS134G09+ ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
                      ____________________________________________________________
consensus ATGAATCTTTCCCTTTTGATTCATGTATCCTTCTCAGATTCTCTGTTCCAGAAGCTGCAT
 
. : . : . : . : . : . :
JMFS082H08+ CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
JMSF028C19+ CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
JMFS100H02+ CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
JMFS134G09+ CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
                      ____________________________________________________________
consensus CAGCTGCATCTTTAGCAGCTCTAAAACGCCTTGCTCGCTGTTGATTCATTTTAGCACGCG
 
. : . : . : . : . : . :
JMFS082H08+ GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
JMSF028C19+ GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
JMFS100H02+ GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
JMFS134G09+ GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
                      ____________________________________________________________
consensus GTGCAACTCCATCAATCGCCATGAATAAAAGCTTCCGGGGCCTAATGATTGAAAAGACCC
 
. : . : . : . : . : . :
JMFS082H08+ TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
JMSF028C19+ TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
JMFS100H02+ TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
JMFS134G09+ TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
                      ____________________________________________________________
consensus TATCAAGATACTTGAATACCGCCATGAACACATCATCGTAGGTCTTCGGAGGAGGCAAGC
 
. : . : . : . : . : . :
JMFS082H08+ CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
JMSF028C19+ CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
JMFS100H02+ CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
JMFS134G09+ CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
                      ____________________________________________________________
consensus CTTCAGGATGAAAACAAGGGTGCACAATCCCATTCATATCGAGATACAAGTTATCAAATT
 
. : . : . : . : . : . :
JMFS082H08+ CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
JMSF028C19+ CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
JMFS100H02+ CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
JMFS134G09+ CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
                      ____________________________________________________________
consensus CATATCCGTTAGGATTTGGTCCGGAAGTGTCAATTGGGACGGTAACGCCGTTGAAGACCG
 
. : . : . : . : . : . :
JMFS082H08+ CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
JMSF028C19+ CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
JMFS100H02+ CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
JMFS134G09+ CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
                      ____________________________________________________________
consensus CCGGAGTTTCTTCCACTGCCGGCTCAACGGAACGAGGGTACCGTTCGAGCAGCCATCGAT
 
. : . : . : . : . : . :
JMFS082H08+ AGAACGCAGGTATACCCATCTTGAGAAGC
JMSF028C19+ AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGGTTTTGTTGTTCAGAG
JMFS100H02+ AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGGTTTTGTTGTTCAGAG
JMFS134G09+ AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGG-TTTGTTGTTCAGAG
                      ____________________________________________________________
consensus AGAACGCAGGTATACCCATCTTGAGAAGCGGTTGGTTTTGCTGGGTTTTGTTGTTCAGAG
 
. : . : . : . : . : . :
JMSF028C19+ AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCT
JMFS100H02+ AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCT
JMFS134G09+ AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCTAGGGTTTGCGGACCAGCAAGGGTGGA
                      ____________________________________________________________
consensus AAAAGATATTGTTCAGAAATGCAGGGTTTAAGCTAGGGTTTGCGGACCAGCAAGGGTGGA