Contig 006300:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS048F10Sequence581006300 (2)gb|AAB09598.1|5e-107cp-SecA [Zea mays]
JMFS129C11Sequence624006300 (2)ref|XP_004166186.1|3e-98PREDICTED: protein translocase subunit SECA1, chloroplastic-like, partial [Cucu

Alignment

This contig is upended


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JMFS048F10+                                                  TCATCAATTAGGATAGAATCA
                      ____________________________________________________________
consensus                                                    TCATCAATTAGGATAGAATCA
 
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JMFS048F10+           TCTTCATCAATCACACAGTAATTAAAACGTTGCAACACAAGCTCATCCACAGTCGTGGCA
                      ____________________________________________________________
consensus             TCTTCATCAATCACACAGTAATTAAAACGTTGCAACACAAGCTCATCCACAGTCGTGGCA
 
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JMFS048F10+           AGATTATCTCTCAGGTAATCAAATCCCAGCTCACTATTAGTCACATATGTGATGTCACAG
JMFS129C11+                                               TTAGTCACATATGTGATGTCACAG
                      ____________________________________________________________
consensus             AGATTATCTCTCAGGTAATCAAATCCCAGCTCACTATTAGTCACATATGTGATGTCACAG
 
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JMFS048F10+           AGATAATTTTCCCTCCTCTGCTCACTTGTCATATTTTGTTGGATCAGGCCAACTTTAAGT
JMFS129C11+           AGATAATTTTCCCTCCTCTGCTCACTTGTCATATTTTGTTGGATCAGGCCAACTTTAAGT
                      ____________________________________________________________
consensus             AGATAATTTTCCCTCCTCTGCTCACTTGTCATATTTTGTTGGATCAGGCCAACTTTAAGT
 
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JMFS048F10+           CCGAGAAACCGAGGAACTTGACCAACCCATTCACAATCTCTTCGAGCTAAATAATCATTT
JMFS129C11+           CCGAGAAACCGAGGAACTTGACCAACCCATTCACAATCTCTTCGAGCTAAATAATCATTT
                      ____________________________________________________________
consensus             CCGAGAAACCGAGGAACTTGACCAACCCATTCACAATCTCTTCGAGCTAAATAATCATTT
 
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JMFS048F10+           ACTGTAACCACATGAACTCCTTTTCCAGTCAATGCATTCAAATAAGCAGGTAATATAGCT
JMFS129C11+           ACTGTAACCACATGAACTCCTTTTCCAGTCAATGCATTCAAATAAGCAGGTAATATAGCT
                      ____________________________________________________________
consensus             ACTGTAACCACATGAACTCCTTTTCCAGTCAATGCATTCAAATAAGCAGGTAATATAGCT
 
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JMFS048F10+           ACAAGGGTCTTTCCTTCTCCGGTCCTCATTTCAGCTATTTCTCCCTTATGAAGAACCATG
JMFS129C11+           ACAAGTGTCTTTCCTTCTCCGGTCCTCATTTCAGCTATTTCTCCCTTATGAAGAACCATG
                      ____________________________________________________________
consensus             ACAAGTGTCTTTCCTTCTCCGGTCCTCATTTCAGCTATTTCTCCCTTATGAAGAACCATG
 
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JMFS048F10+           CCCCCTATTAGTTGCACATCAAAAGGACGAAGTCCTAGAACCCTTTTTGAAGCCTCTCTT
JMFS129C11+           CCCCCTATTAGTTGCACATCAAAAGGACGAAGTCCTAGAACCCTTTTTGAAGCCTCTCTT
                      ____________________________________________________________
consensus             CCCCCTATTAGTTGCACATCAAAAGGACGAAGTCCTAGAACCCTTTTTGAAGCCTCTCTT
 
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JMFS048F10+           ACAACAGAAAATGCTTCAGGTAAAAGAGAGTCCAAAGATTCACCGCTACGGGCACGTTGT
JMFS129C11+           ACAACAGAAAATGCTTCAGGTAAAAGAGAGTCCAAAGATTCACCGCTACGGGCACGTTGT
                      ____________________________________________________________
consensus             ACAACAGAAAATGCTTCAGGTAAAAGAGAGTCCAAAGATTCACCGCTACGGGCACGTTGT
 
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JMFS048F10+           TGTAAAGGGCAAGTCATGTCTCTCAANTGGGAGTNTGATAAAGAAGACA-TNGGGAATCG
JMFS129C11+           TGTAAAGTGGCAGTCATGTCTCTCAATTGGGAGTCTGATAAAGAAGACATTTGGGAATCG
                      ____________________________________________________________
consensus             TGTAAAGTGGCAGTCATGTCTCTCAATTGGGAGTCTGATAAAGAAGACATTTGGGAATCG
 
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JMFS048F10+           AAGGCGTTAATAAGTGC                                           
JMFS129C11+           AAGGCGTTAATAAGTGCGAGGGTGGAGGAGTACAACTGTCTTGTGGACTCGCCGGAATCA
                      ____________________________________________________________
consensus             AAGGCGTTAATAAGTGCGAGGGTGGAGGAGTACAACTGTCTTGTGGACTCGCCGGAATCA
 
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JMFS129C11+           GTGGACTTGAAGATCCCTCCGAAGAGACCTCCTAAAGACGCCACGATGGGGCGGCTCCGC
                      ____________________________________________________________
consensus             GTGGACTTGAAGATCCCTCCGAAGAGACCTCCTAAAGACGCCACGATGGGGCGGCTCCGC
 
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JMFS129C11+           GGCCTCCTCATCCATCCCGCTCTGAGTTCCACTGGTTTAGTCCCAGCAAGATGGAGAGCA
                      ____________________________________________________________
consensus             GGCCTCCTCATCCATCCCGCTCTGAGTTCCACTGGTTTAGTCCCAGCAAGATGGAGAGCA