Contig 006284:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013L12Sequence551006284 (3)emb|CDP05200.1|4e-19unnamed protein product [Coffea canephora]678006284 (3)emb|CDP05200.1|1e-19unnamed protein product [Coffea canephora]
JMFS110F05Sequence622006284 (3)ref|XP_002882689.1|3e-29hypothetical protein ARALYDRAFT_317863 [Arabidopsis lyrata subsp. lyrata] gb|EF

Alignment

This contig is upended


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rJMFF013L12-                                   TGATGAGTGAAAGAGGTTTGACGGATAAAGGAACG
                      ____________________________________________________________
consensus                                      TGATGAGTGAAAGAGGTTTGACGGATAAAGGAACG
 
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rJMFF013L12-          AGCACACATCTTCTTGCAAGTTCTGAACTTTTATTGAAATTCAACCTAAAATTAAAAGTT
                      ____________________________________________________________
consensus             AGCACACATCTTCTTGCAAGTTCTGAACTTTTATTGAAATTCAACCTAAAATTAAAAGTT
 
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rJMFF013L12-          TTTACCATCAATTGATACCGAGAACGATGTCCAATTCCCACTCCCTCTTCGCACGAGTAA
JMFF013L12+                                                            CGCACGAGTAA
                      ____________________________________________________________
consensus             TTTACCATCAATTGATACCGAGAACGATGTCCAATTCCCACTCCCTCTTCGCACGAGTAA
 
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rJMFF013L12-          TTGCAATTTGTCTAGGTAAAAATTCCTGTAGGAGAGACGTCCAATCACTGAGTGTAAAGA
JMFF013L12+           TTGCAATTTGTCTAGGTAAAAATTCCTGTAGGAGAGACGTCCAATCACTGAGTGTAAAGA
                      ____________________________________________________________
consensus             TTGCAATTTGTCTAGGTAAAAATTCCTGTAGGAGAGACGTCCAATCACTGAGTGTAAAGA
 
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rJMFF013L12-          TGGGCATTCCAGTCCTGATTGTCTGAGACATTGCACTTGAGGAGCTTCATCCTTTTTTCA
JMFF013L12+           TGGGCATTCCAGTCCTGATTGTNTGAGACATTGCACTTGAGGAGCTTCATCCTTTTTTCA
                      ____________________________________________________________
consensus             TGGGCATTCCAGTCCTGATTGTCTGAGACATTGCACTTGAGGAGCTTCATCCTTTTTTCA
 
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rJMFF013L12-          GTAACATCGGGATTACCTTTCCAATAAGCATAGGGCTCCCTATCTATCCATGCTGCCTTT
JMFF013L12+           GTAACATCGGGATTACCTTTCCAATAAGCATAGGGCTCCCTATCTATCCATGCTGCCTTT
                      ____________________________________________________________
consensus             GTAACATCGGGATTACCTTTCCAATAAGCATAGGGCTCCCTATCTATCCATGCTGCCTTT
 
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rJMFF013L12-          CTGTTCCCCTCGCTTAGGTCATTTAGTAAGGCCTCCCACAACCTTAAAGAACAAATCTGT
JMFF013L12+           CTGTTCCCCTCGCTTAGGTCATTTAGTAAGGCCTCCCACAACCTTAAAGAACAAATCTGT
JMFS110F05+                                                                 ATCTGT
                      ____________________________________________________________
consensus             CTGTTCCCCTCGCTTAGGTCATTTAGTAAGGCCTCCCACAACCTTAAAGAACAAATCTGT
 
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rJMFF013L12-          TTCAGGAAGCAAAGTTATTTGTGCATACACCTCATCTGTCTCTGGTTCAGCTTGCAGACG
JMFF013L12+           TTCAGGAAGCAAAGTTATTTGTGCATACACCTCATCTGTCTCTGGTTCAGCTTGCAGACG
JMFS110F05+           TTCAGGAAGCAAAGTTATTTGTGCATACACCTCATCTGTCTCTGGTTCAGCCTGCAGACG
                      ____________________________________________________________
consensus             TTCAGGAAGCAAAGTTATTTGTGCATACACCTCATCTGTCTCTGGTTCAGCTTGCAGACG
 
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rJMFF013L12-          AACATTCAGAACTCTGC--AGTCTTCTCATCTTTGAACTCAATAACCTTCTAAAATTGGG
JMFF013L12+           AACATTCAGAACTCTGC--AGTCTTCTCATCTTTGAACTCAATAACCTTCTAAAATTGGG
JMFS110F05+           AACATTCAGAACTCTGCATAGTCTTCTCATCTTTGAACTCAATAACCTTCTAAAATTGGG
                      ____________________________________________________________
consensus             AACATTCAGAACTCTGC--AGTCTTCTCATCTTTGAACTCAATAACCTTCTAAAATTGGG
 
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rJMFF013L12-          TGGCACTTCATACCTTTG                                          
JMFF013L12+           TGGCACTTCATACCTTTG                                          
JMFS110F05+           TGGCACTTCATACCTTTGATGATCAACAACTTGGTTTGCTGAGATCCATGCCCACTTCCC
                      ____________________________________________________________
consensus             TGGCACTTCATACCTTTGATGATCAACAACTTGGTTTGCTGAGATCCATGCCCACTTCCC
 
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JMFS110F05+           AAATTCAGGCTTCTCAGTCCCATCACCCAGAAAGTTGATTTCTTCCTCCTTTCCAGTAAA
                      ____________________________________________________________
consensus             AAATTCAGGCTTCTCAGTCCCATCACCCAGAAAGTTGATTTCTTCCTCCTTTCCAGTAAA
 
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JMFS110F05+           CTACAAGAGGAACCATTTCTGTGTTTGACCCTTCCAGTCAGTTCCCCATTTACGCTTAAC
                      ____________________________________________________________
consensus             CTACAAGAGGAACCATTTCTGTGTTTGACCCTTCCAGTCAGTTCCCCATTTACGCTTAAC
 
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JMFS110F05+           TTTTTACCTGACATCTGATGGGTAATCATATGTTATCCAGTACGACATCTCATATGCAAA
                      ____________________________________________________________
consensus             TTTTTACCTGACATCTGATGGGTAATCATATGTTATCCAGTACGACATCTCATATGCAAA
 
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JMFS110F05+           GAGTGAAAAACAAGAACTTGATGGCCTTCAATTCTGCAGCTTCTTCTGGGTACTTCTCAT
                      ____________________________________________________________
consensus             GAGTGAAAAACAAGAACTTGATGGCCTTCAATTCTGCAGCTTCTTCTGGGTACTTCTCAT
 
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JMFS110F05+           ATTCACCGAATTTGGAATTCCACTCGGCTTCAATTGCTGCACCCTCTGGGACATGGCGGC
                      ____________________________________________________________
consensus             ATTCACCGAATTTGGAATTCCACTCGGCTTCAATTGCTGCACCCTCTGGGACATGGCGGC
 
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JMFS110F05+           TCTAATGGCTCTTCACATCATCAGGCACATCGAAATGCACTTCCATGAACATTGTAATTG
                      ____________________________________________________________
consensus             TCTAATGGCTCTTCACATCATCAGGCACATCGAAATGCACTTCCATGAACATTGTAATTG
 
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JMFS110F05+           TTTGCCTTGTTTGGTGAGCCAAACCCGATGGTTGTTGTCACCTTGATCATTGTGGGCTTG
                      ____________________________________________________________
consensus             TTTGCCTTGTTTGGTGAGCCAAACCCGATGGTTGTTGTCACCTTGATCATTGTGGGCTTG