Contig 006276:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036C13Sequence517006276 (7)ref|XP_009798925.1|7e-10PREDICTED: protein MEI2-like 4 isoform X2 [Nicotiana sylvestris]607002637 (2)ref|NP_001132246.1|9e-68hypothetical protein [Zea mays] gb|ACF81018.1| unknown [Zea mays] gb|AFW71581.1|
JMFS020D06Sequence627006276 (7)
JMFS082H06Sequence613006276 (7)
JMFS103D06Sequence560006276 (7)
JMFS119F11Sequence627006276 (7)
JMFS125E07Sequence563006276 (7)ref|XP_009798925.1|3e-16PREDICTED: protein MEI2-like 4 isoform X2 [Nicotiana sylvestris]
JMSF025L09Sequence677006276 (7)620002637 (2)ref|NP_001132246.1|1e-52hypothetical protein [Zea mays] gb|ACF81018.1| unknown [Zea mays] gb|AFW71581.1|

Alignment

This contig is upended


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JMFS125E07+                                                                 GTAAAT
                      ____________________________________________________________
consensus                                                                   GTAAAT
 
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JMFS125E07+           AAGAATTAGGAAGCTCATAACCTTNTGTCATCTGACAACCCATAGGTATCTGGTTCTCAA
                      ____________________________________________________________
consensus             AAGAATTAGGAAGCTCATAACCTTNTGTCATCTGACAACCCATAGGTATCTGGTTCTCAA
 
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JMFS125E07+           AAGGCAATGAAGGAACACTTCCTACTCTGAATGTTCTGTCTGTTTTCAGACCATTGAAAT
JMFF036C13+                                     CTGAATGTTCTGTCTGTTTTCAGACCATTGAAAT
                      ____________________________________________________________
consensus             AAGGCAATGAAGGAACACTTCCTACTCTGAATGTTCTGTCTGTTTTCAGACCATTGAAAT
 
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JMFS125E07+           TATGCAGGCTATTTGACTTCCAATACCCATTCTGGCTCTCATCATGAAAACGCAAGTCCT
JMFF036C13+           TATGCAGGCTATTTGACTTCCAATACCCATTCTGGCTCTCATCATGAAAACGCAAGTCCT
                      ____________________________________________________________
consensus             TATGCAGGCTATTTGACTTCCAATACCCATTCTGGCTCTCATCATGAAAACGCAAGTCCT
 
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JMFS125E07+           CAGAAAAGAAGGACGGAGACAAATCCTGTGGGTCCATCATCTGGGAAGGCATTATGCAAT
JMFF036C13+           CAGAAAAGAAGGACGGAGACAAATCCTGTGGGTCCATCATCTGGGAAGGCATTATGCAAT
JMFS082H06+                                 ATCCTGTGGGTCCATCATCTGGGAAGGCATTATGCAAT
JMFS119F11+                                                 ATCTGGGAAGGCATTATGCAAT
                      ____________________________________________________________
consensus             CAGAAAAGAAGGACGGAGACAAATCCTGTGGGTCCATCATCTGGGAAGGCATTATGCAAT
 
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JMFS125E07+           CTGGACTGAAAAAGCACTAGAAAAACTCAACAGAAGACAAATAGCATTCGCTTTCACCAA
JMFF036C13+           CTGGACTGAAAAAGCACTAGAAAAACTCAACAGAAGACAAATAGCATTCGCTTTCACCAA
JMFS082H06+           CTGGACTGAAAAAGCACTAGAAAAACTCAACAGAAGACAAATAGCATTCGCTTTCACCAA
JMFS119F11+           CTGGACTGAAAAAGCACTAGAAAAACTCAACAGAAGACAAATAGCATTCGCTTTCACCAA
                      ____________________________________________________________
consensus             CTGGACTGAAAAAGCACTAGAAAAACTCAACAGAAGACAAATAGCATTCGCTTTCACCAA
 
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JMFS125E07+           CAATCAAATACACCCAATTGTAGGAAAAATCAGCAATGTCCTGCTTCAAAGAGCTTTTAG
JMFF036C13+           CAATCAAATACACCCAATTGTAGGAAAAATCAGCAATGTCCTGCTTCAAAGAGCTTTTAG
JMFS082H06+           CAATCAAATACACCCAATTGTAGGAAAAATCAGCAATGTCCTGCTTCAAAGAGCTTTTAG
JMFS119F11+           CAATCAAATACACCCAATTGTAGGAAAAATCAGCAATGTCCTGCTTCAAAGAGCTTTTAG
                      ____________________________________________________________
consensus             CAATCAAATACACCCAATTGTAGGAAAAATCAGCAATGTCCTGCTTCAAAGAGCTTTTAG
 
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JMFS125E07+           AGTATGAACATCATTGGTGGGACACAAAATGCGAGAGCAAGTTCCCAGAAACAAAATTCG
JMFF036C13+           AGTATGAACATCATTGGTGGGACACAAAATGCGAGAGCAAGTTCCCAGAAACAAAATTCG
JMFS082H06+           AGTATGAACATCATTGGTGGGACACAAAATGCGAGAGCAAGTTCCCAGAAACAAAATTCG
JMFS119F11+           AGTATGAACATCATTGGTGGGACACAAAATGCGAGAGCAAGTTCCCAGAAACAAAATTCG
JMSF025L09+                                  ACAAAATGCGAGAGCAAGTTCCCAGAAACAAAATTCG
                      ____________________________________________________________
consensus             AGTATGAACATCATTGGTGGGACACAAAATGCGAGAGCAAGTTCCCAGAAACAAAATTCG
 
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JMFS125E07+           CAGAGGGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
JMFF036C13+           CAGAGGGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
JMFS082H06+           CAGAGGGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
JMFS119F11+           CAGAGGGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
JMFS020D06+                GGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
JMSF025L09+           CAGAGGGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
                      ____________________________________________________________
consensus             CAGAGGGAGCAAGGGTCACAACGGCAAAGGAGATTTTATAGGAAAGGAAATGGATGCTTA
 
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JMFS125E07+           GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
JMFF036C13+           GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
JMFS082H06+           GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
JMFS119F11+           GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
JMFS020D06+           GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
JMSF025L09+           GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
JMFS103D06+                                                   GGAAGGAAGATTGAAGAAGC
                      ____________________________________________________________
consensus             GAGAGAAAACGAGAATAAATTATGGCAAAAGGCAAGGGAAGGAAGGAAGATTGAAGAAGC
 
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JMFS125E07+           GATCTAGGTGAATGTGT                                           
JMFF036C13+           GATATAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
JMFS082H06+           GATCTAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
JMFS119F11+           GATCTAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
JMFS020D06+           GATCTAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
JMSF025L09+           GATCTAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
JMFS103D06+           GATCTAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
                      ____________________________________________________________
consensus             GATCTAGGTGAATGTGTTCCGTGCAAGAACCACCAAAGCTTGGATGCCTTCCTCTCTCCG
 
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JMFF036C13+           TG                                                          
JMFS082H06+           TGCCTCGTTATTTCTACAATGCACGTTAACGGAATGAATTCTCTGAATATATTATCTCCG
JMFS119F11+           TGCCTCGTTATTTCTACAATGCACGTTAACGGAATGAATTCTCTGAATATATTATCTCCG
JMFS020D06+           TGCCTCGTTATTTCTACAATGCACGTTAACGGAATGAATTCTCTGAATATATTATCTCCG
JMSF025L09+           TGCCTCGTTATTTCTACAATGCACGTTAACGGAATGAATTCTCTGAATATATTATCTCCG
JMFS103D06+           TGCCTCGTTATTTCTACAATGCACGTTAACGGAATGAATTCTCTGAATATATTATCTCCG
                      ____________________________________________________________
consensus             TGCCTCGTTATTTCTACAATGCACGTTAACGGAATGAATTCTCTGAATATATTATCTCCG
 
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JMFS082H06+           GTTTCCTCTCGGTATATATGTCCCTTTTACAACAGGCCGGTCTCTTTATTCCTCGGCAAG
JMFS119F11+           GTTTCCTCTCGGTATATATGTCCCTTTTACAACAGGCCGGTCTCTTTATTCCTCGGCAAG
JMFS020D06+           GTTTCCTCTCGGTATATATGTCCCTTTTACAACAGGCCGGTCTCTTTATTCCTCGGCAAG
JMSF025L09+           GTTTCCTCTCGGTATATATGTCCCTTTTACAACAGGCCGGTCTCTTTATTCCTCGGCAAG
JMFS103D06+           GTTTCCTCTCGGTATATATGTCCCTTTTACAACAGGCCGGTCTCTTTATTCCTCGGCAAG
                      ____________________________________________________________
consensus             GTTTCCTCTCGGTATATATGTCCCTTTTACAACAGGCCGGTCTCTTTATTCCTCGGCAAG
 
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JMFS082H06+           CGCTCCTCCTCGATCGGAAACTCCCGAGCTCCAGCGAGCGATGGACGGCGGTAATTCCAA
JMFS119F11+           CGCTCCTCCTCGATCGGAAACTCCCGAGCTCCAGCGAGCGATGGACGGCGGTAATTCCAA
JMFS020D06+           CGCTCCTCCTCGATCGGAAACTCCCGAGCTCCAGCGAGCGATGGACGGCGGTAATTCCAA
JMSF025L09+           CGCTCCTCCTCGATCGGAAACTCCCGAGCTCCAGCGAGCGATGGACGGCGGTAATTCCAA
JMFS103D06+           CGCTCCTCCTCGATCGGAAACTCCCGAGCTCCAGCGAGCGATGGACGGCGGTAATTCCAA
                      ____________________________________________________________
consensus             CGCTCCTCCTCGATCGGAAACTCCCGAGCTCCAGCGAGCGATGGACGGCGGTAATTCCAA
 
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JMFS082H06+           GCCCCTCGCTCGCACTTGCTCTCTCCTCCTGCTCT                         
JMFS119F11+           GCCCCTCGCTCGCACTTGCTCTCTCCTCCTGCTCTGTTTTGCACAGAGAGGGAAAGAGAG
JMFS020D06+           GCCCCTCGCTCGCACTTGCTCTCTCCTCCTGCTCTGTTTTGCACAGAGAGGGAAAGAGAG
JMSF025L09+           GCCCCTCGCTCGCACTTGCTCTCTCCTCCTGCTCTGTTTTGCACAGAGAGGGAAAGAGAG
JMFS103D06+           GCCCCTCGCTCGCACTTGCTCTCTCCTCCTGCTCTGTTTTGCACAGAGAGGGAAAGAGAG
                      ____________________________________________________________
consensus             GCCCCTCGCTCGCACTTGCTCTCTCCTCCTGCTCTGTTTTGCACAGAGAGGGAAAGAGAG
 
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JMFS119F11+           AGGGA                                                       
JMFS020D06+           AGGGAGAGACACAGGGAGAGAACGAGGGAGGGAGCAAATAAGCAAATTGGAGATACAATA
JMSF025L09+           AGGGAGAGACACAGGGAGAGAACGAGGGAGGGAGCAAATAAGCAAATTGGAGATACAATA
JMFS103D06+           AGGGAGAGACACAGGGAGAGAACGAGGGAGGGAGCAAATAAGCAAATTGGAGATACAATA
                      ____________________________________________________________
consensus             AGGGAGAGACACAGGGAGAGAACGAGGGAGGGAGCAAATAAGCAAATTGGAGATACAATA
 
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JMFS020D06+           CAAATAGAAAATTCGGAGATCGCTTGGCCGTCGATTATAATTGAAACTGACAGCACCGTA
JMSF025L09+           CAAATAGAAAATTCGGAGATCGCTTGGCCGTCGATTATAATTGAAACTGACAGCACCGTA
JMFS103D06+           CAAATAGAAAATTCGGAGATCGCTTGGCCGTCGATTATAATTGAAACTGACAGCACCGTA
                      ____________________________________________________________
consensus             CAAATAGAAAATTCGGAGATCGCTTGGCCGTCGATTATAATTGAAACTGACAGCACCGTA
 
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JMFS020D06+           CAAAATTGATAAAAAAGGAGAAAATTATGGCGGAGGAGTGTAAAGGAAGACCTGGTCACC
JMSF025L09+           CAAAATTGATAAAAAAAGAGGAAATTATGGCGGAGGAGTGTAAAGGAAGACCTGGTCACC
JMFS103D06+           CAAAATTGATAAAAAAGGAGAAAATTATGGCGGAGGAGTGTAAAGGAAGACCTGGTCACC
                      ____________________________________________________________
consensus             CAAAATTGATAAAAAAGGAGAAAATTATGGCGGAGGAGTGTAAAGGAAGACCTGGTCACC
 
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JMFS020D06+           AGAAACGCTCCTACGCGAGGATCTCCGATGAG                            
JMSF025L09+           AGAAACGCTCCTACGCGAGGATCTCCGATGAGCTAGCTC                     
JMFS103D06+           AGAAACGCTCCTACGCGAGGATCTCCGATGAGCTAGCTCATCTATCAATCACAGGAGAGA
                      ____________________________________________________________
consensus             AGAAACGCTCCTACGCGAGGATCTCCGATGAGCTAGCTCATCTATCAATCACAGGAGAGA