Contig 006274:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS100A01Sequence627006274 (3)ref|XP_006347914.1|3e-101PREDICTED: CCR4-NOT transcription complex subunit 1-like [Solanum tuberosum]
JMFS110F06Sequence625006274 (3)ref|XP_009776944.1|6e-93PREDICTED: CCR4-NOT transcription complex subunit 1 isoform X1 [Nicotiana sylve
JMFS138F06Sequence622006274 (3)ref|XP_009776945.1|3e-99PREDICTED: CCR4-NOT transcription complex subunit 1 isoform X2 [Nicotiana sylve

Alignment

This contig is upended


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JMFS110F06+                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMFS110F06+           CCCATTCCATTGTTAGGTGAGGAAGCACTATGAAGCTGAGATGAACTTGTATCTATTTCT
                      ____________________________________________________________
consensus             CCCATTCCATTGTTAGGTGAGGAAGCACTATGAAGCTGAGATGAACTTGTATCTATTTCT
 
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JMFS110F06+           TCTGATACAATATCCAAAGGCTGTGGAACAGAACTAATTCCTGCATTAACAAGGCCAGCC
JMFS138F06+                       TCCAAAGGCTGTGGAACAGAACTAATTCCTGCATTAACAAGGCCAGCC
                      ____________________________________________________________
consensus             TCTGATACAATATCCAAAGGCTGTGGAACAGAACTAATTCCTGCATTAACAAGGCCAGCC
 
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JMFS110F06+           GAGTAAATTGCAGGGTTCATTTGCCCAGAGCCAGCCACATAAGCCCGAGACAGACCACTG
JMFS138F06+           GAGTAAATGNCAGGGTTCATTTGCCCAGAGCCAGCCACATAAGCCCGAGACAGACCACTG
                      ____________________________________________________________
consensus             GAGTAAATTGCAGGGTTCATTTGCCCAGAGCCAGCCACATAAGCCCGAGACAGACCACTG
 
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JMFS110F06+           CTACTTGGTGAAGGAGAAGGACCAACAGGCAAAGTATTTGAGCTTTGTCCCGATTGATTT
JMFS138F06+           CTACTTGGTGAAGGAGAAGGACCAACAGGCAAAGTATTTGAGCTTTGTCCCGATTGATTT
                      ____________________________________________________________
consensus             CTACTTGGTGAAGGAGAAGGACCAACAGGCAAAGTATTTGAGCTTTGTCCCGATTGATTT
 
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JMFS110F06+           TGCAGAGGTAAGCGAACAAAATCCTCATAAACTCGCTGTTGAGAATGGGATAAACGGCCA
JMFS138F06+           TGCAGAGGTAAGCGAACAAAATCCTCATAAACTCGCTGTTGAGAATGGGATAAACGGCCA
                      ____________________________________________________________
consensus             TGCAGAGGTAAGCGAACAAAATCCTCATAAACTCGCTGTTGAGAATGGGATAAACGGCCA
 
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JMFS110F06+           GGTTTAGGACGAAGTGCTTCAGGTAAAACTCCCATGTGTCCTGGAGTATAGACACCTGAA
JMFS138F06+           GGTTTAGGACGAAGTGCTTCAGGTAAAACTCCCATGTGTCCTGGAGTATAGACACCTGAA
                      ____________________________________________________________
consensus             GGTTTAGGACGAAGTGCTTCAGGTAAAACTCCCATGTGTCCTGGAGTATAGACACCTGAA
 
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JMFS110F06+           TCAAAGAATGTGGGTCCGTCTCTATGCTTCCTTATAGCAAGCTGTTGAGCAATGGTTTCA
JMFS138F06+           TCAAAGAATGTGGGTCCGTCTCTATGCTTCCTTATAGCAAGCTGTTGAGCAATGGTTTCA
                      ____________________________________________________________
consensus             TCAAAGAATGTGGGTCCGTCTCTATGCTTCCTTATAGCAAGCTGTTGAGCAATGGTTTCA
 
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JMFS110F06+           TCAATAGTTTGTATTGCCTTCTCTGTTGCAGCTTGCTCAATCAACGCACAACCAAGGTCA
JMFS138F06+           TCAATAGTTTGTATTGCCTTCTCTGTTGCAGCTTGCTCAATCAACGCACAACCAAGGTCA
JMFS100A01+                                            TGCTCAATCAACGCACAACCAAGGTCA
                      ____________________________________________________________
consensus             TCAATAGTTTGTATTGCCTTCTCTGTTGCAGCTTGCTCAATCAACGCACAACCAAGGTCA
 
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JMFS110F06+           AGGTTGTCATTAGTCACTAGTTGTACAGCTTGTTCAAGGAGCTCACTAGAAATACTTAAT
JMFS138F06+           AGGTTGTCATTAGTCACTAGTTGTACAGCTTGTTCAAGGAGCTCACTAGAAATACTTAAT
JMFS100A01+           AGGTTGTCATTAGTCACTAGTTGTACAGCTTGTTCAAGGAGCTCACTAGAAATACTTAAT
                      ____________________________________________________________
consensus             AGGTTGTCATTAGTCACTAGTTGTACAGCTTGTTCAAGGAGCTCACTAGAAATACTTAAT
 
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JMFS110F06+           CCCTGAAGTGTACTCCGTAGCTGGCTCGATATTGAACCACGTAAAGGTTCCTTGCATGTC
JMFS138F06+           CCCTGAAGTGTACTCCGTAGCTGGCTCGATATTGAACCACGTAAAGGTTCCTTGCATGTC
JMFS100A01+           CCCTGAAGTGTACTCCGTAGCTGGCTCGATATTGAACCACGTAAAGGTTCCTTGCATGTC
                      ____________________________________________________________
consensus             CCCTGAAGTGTACTCCGTAGCTGGCTCGATATTGAACCACGTAAAGGTTCCTTGCATGTC
 
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JMFS110F06+           ACATGAGCTAGACTTCCTGCTAAA                                    
JMFS138F06+           ACATGAGCTAGACTTCCTGCTAAACTAGCAACCATCAGATGTGCAGCATTACGTATACGG
JMFS100A01+           ACATGAGCTAGACTTCCTGCTAAACTAGCAACCATCAGATGTGCAGCATTACGTATACGG
                      ____________________________________________________________
consensus             ACATGAGCTAGACTTCCTGCTAAACTAGCAACCATCAGATGTGCAGCATTACGTATACGG
 
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JMFS138F06+           GTCTCATCTGACTCCATGGCATAGTCCTTCAAAA                          
JMFS100A01+           GTCTCATCTGACTCCATGGCATAGTCCTTCAAAACAAGTTCCTTCGTTGTCTGAGTAGCT
                      ____________________________________________________________
consensus             GTCTCATCTGACTCCATGGCATAGTCCTTCAAAACAAGTTCCTTCGTTGTCTGAGTAGCT
 
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JMFS100A01+           ATAGAAACACTGCGGTGCACAATGCTGGTAACTATCTCTTTTATAGCTCTATCCATGGCA
                      ____________________________________________________________
consensus             ATAGAAACACTGCGGTGCACAATGCTGGTAACTATCTCTTTTATAGCTCTATCCATGGCA
 
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JMFS100A01+           ATGGGAAGCACACTTTGAAAATGCACATGCATGCCCAGAGCACGAAGTCTTGGGTTGATG
                      ____________________________________________________________
consensus             ATGGGAAGCACACTTTGAAAATGCACATGCATGCCCAGAGCACGAAGTCTTGGGTTGATG
 
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JMFS100A01+           ATAACTTGCTGTTCAATATTAGAGGTAGGTGTAGGAAGCTGACTAACAGAAAACGGTGTC
                      ____________________________________________________________
consensus             ATAACTTGCTGTTCAATATTAGAGGTAGGTGTAGGAAGCTGACTAACAGAAAACGGTGTC
 
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JMFS100A01+           TGCCCTGGTATGATACCTTGACCAGAAGGAATTTGATGCTGATCTACTAAAGCTACTAGC
                      ____________________________________________________________
consensus             TGCCCTGGTATGATACCTTGACCAGAAGGAATTTGATGCTGATCTACTAAAGCTACTAGC
 
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JMFS100A01+           TTCTCTTCCTCCATAAGTGTTGCAGAAGGAAGATGGAGTGGAGCAGCATACTGAGATAAT
                      ____________________________________________________________
consensus             TTCTCTTCCTCCATAAGTGTTGCAGAAGGAAGATGGAGTGGAGCAGCATACTGAGATAAT
 
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JMFS100A01+           ATACGTGAGTGACCACCAGGATGAGATGATGTGGCAGCTTCAAGTGGTAGTTCAACCTGA
                      ____________________________________________________________
consensus             ATACGTGAGTGACCACCAGGATGAGATGATGTGGCAGCTTCAAGTGGTAGTTCAACCTGA