Contig 006267:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS093E06Sequence625006267 (3)ref|XP_006279159.1|8e-66hypothetical protein CARUB_v100079671mg, partial [Capsella rubella] gb|EOA12057.
JMSF010H10Sequence446003576 (2)gb|KDO70006.1|2e-61hypothetical protein CISIN_1g0068982mg, partial [Citrus sinensis] gb|KDO70007.1|725006267 (3)ref|XP_010102837.1|1e-95Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isofor
JMSF017E20Sequence251003576 (2)emb|CDP00596.1|3e-15unnamed protein product [Coffea canephora]714006267 (3)ref|XP_010102837.1|8e-104Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isofor

Alignment

This contig is upended


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rJMSF017E20+                            AATACATACCTTTGTTGGCTAGTCAACTGGGTATTGATTTTT
rJMSF010H10+                 TGCAATAATTGAATACATACCTTTGTTGGCTAGTCAACTGGGTATTGA-TTTT
                      ____________________________________________________________
consensus                    TGCAATAATTGAATACATACCTTTGTTGGCTAGTCAACTGGGTATTGATTTTT
 
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rJMSF017E20+          TTGATGATAAGCTTGGAGCTCTTTGCATGCAGTGGTTGCAGGACAAGGTTCATTCGATAA
rJMSF010H10+          TTGATGATAAGCTTGGAGCTCTTTGCATGCAGTGGTTGCAGGACAAGGTTCATTCGATAA
                      ____________________________________________________________
consensus             TTGATGATAAGCTTGGAGCTCTTTGCATGCAGTGGTTGCAGGACAAGGTTCATTCGATAA
 
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rJMSF017E20+          GAGATGCTGCTGCTAATAACTTGAAGCGTCTAGCAGAAGAATTTGGTCCAGAATGGGCAA
rJMSF010H10+          GAGATGCTACTGCTAATAACTTGAAGCGTCTAGCAGAAGAATTTGGTCCAGAATGGGCAA
                      ____________________________________________________________
consensus             GAGATGCTGCTGCTAATAACTTGAAGCGTCTAGCAGAAGAATTTGGTCCAGAATGGGCAA
 
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rJMSF017E20+          TGCAGCACATCATTCCTCAGGTTTTGGATATGGTCACTAATCCCCATTATTTGTACCGAA
rJMSF010H10+          TGCAGCACATCATTCCTCAGGTCTTGGATATGGTCACTAATCCCCATTATTTGTACCGAA
JMFS093E06-               GCACATCATTCCTCAGGTCTTGGATATGGTCACTAATCCCCATTATTTGTACCGAA
                      ____________________________________________________________
consensus             TGCAGCACATCATTCCTCAGGTCTTGGATATGGTCACTAATCCCCATTATTTGTACCGAA
 
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rJMSF017E20+          TGACAATTCTCCGTGCAATTTCATTGCTTGCACCTGTTATGGGCTCTGAGATAACATGCT
rJMSF010H10+          TGACAATTCTCCGTGCAATTTCATTGCTTGCACCTGTTATGGGCTCTGAGATAACATGCT
JMFS093E06-           TGACAATTCTCCGTGCAATTTCATTGCTTGCACCTGTTATGGGCTCTGAGATAACATGCT
                      ____________________________________________________________
consensus             TGACAATTCTCCGTGCAATTTCATTGCTTGCACCTGTTATGGGCTCTGAGATAACATGCT
 
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rJMSF017E20+          CCAAATTGCTGCCTGCCATCATTACAGCATCTAAGGATAGAGTGCCCAACATCAAATTTA
rJMSF010H10+          CCAAATTGCTGCCTGCCATCATTACAGCATCTAAGGATAGAGTGCCCAACATCAAATTTA
JMFS093E06-           CCAAATTGCTGCCTGCCATCATTACAGCATCTAAGGATAGAGTGCCCAACATCAAATTTA
                      ____________________________________________________________
consensus             CCAAATTGCTGCCTGCCATCATTACAGCATCTAAGGATAGAGTGCCCAACATCAAATTTA
 
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rJMSF017E20+          ACGTAGCAAAGGTTTTACAGTCACTTATCCCCATAGTTGACCAATCAGTGGCAGAAAAAA
rJMSF010H10+          ACGTAGCAAAGGTTTTACAGTCACTTATCCCCATAGTTGACCAATCAGTGGCAGAAAAAA
JMFS093E06-           ACGTAGCAAAGGTTTTACAGTCACTTATCCCCATAGTTGACCAATCAGTGGCAGAAAAAA
                      ____________________________________________________________
consensus             ACGTAGCAAAGGTTTTACAGTCACTTATCCCCATAGTTGACCAATCAGTGGCAGAAAAAA
 
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rJMSF017E20+          TCATTCGTCCCTGTTTGATAGAGTTGGCAGAGGATCCTGATGTGGATGTTCGCTTTTATG
rJMSF010H10+          TCATTCGTCCCTGTTTGATAGAGTTGGCAGAGGATCCTGATGTGGATGTTCGCTTTTATG
JMFS093E06-           TCATTCGTCCCTGTTTGATAGAGTTGGCAGAGGATCCTGATGTGGATGTTCGCTTTTATG
                      ____________________________________________________________
consensus             TCATTCGTCCCTGTTTGATAGAGTTGGCAGAGGATCCTGATGTGGATGTTCGCTTTTATG
 
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rJMSF017E20+          CCAATCAAGCACTTCAGTCAATTGATAAGGTCATGATGTCAAGCTAGATGAAGCTTATTA
rJMSF010H10+          CCAATCAAGCACTTCAGTCAATTGATAAGGTCATGATGTCAAGCTAGATGAAGCTTATTA
JMFS093E06-           CCAATCAAGCACTTCAGTCAATTGATAAGGTCATGATGTCAAGCTAGATGAAGCTTATTA
                      ____________________________________________________________
consensus             CCAATCAAGCACTTCAGTCAATTGATAAGGTCATGATGTCAAGCTAGATGAAGCTTATTA
 
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rJMSF017E20+          GAAGGGGAACTTGCACTGGACACATCTTCTCCCAGTTTAACCTTTCGCTGATATCTGCAG
rJMSF010H10+          GAAGGGGAACTTGCACTGGACACATCTTCTCCCAGTTTAACCTTTCGCTGATATCTGCAG
JMFS093E06-           GAAGGGGAACTTGCACTGGACACATCTTCTCCCAGTTTAACCTTTCGCTGATATCTGCAG
                      ____________________________________________________________
consensus             GAAGGGGAACTTGCACTGGACACATCTTCTCCCAGTTTAACCTTTCGCTGATATCTGCAG
 
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rJMSF017E20+          GGCATATGTATTGTTGTTCTTTGTTAATTAAGCTATTTTTTCTTTCTCGTAGTCTGTTTT
rJMSF010H10+          GGCATATGTATTGTTGTTCTTTGTTAATTAAGCTATTTTTTCTTTCTCGTAGTCTGTTTT
JMFS093E06-           GGCATATGTATTGTTGTTCTTTGTTAATTAAGCTATTTTTTCTTTCTCGTAGTCTGTTTT
                      ____________________________________________________________
consensus             GGCATATGTATTGTTGTTCTTTGTTAATTAAGCTATTTTTTCTTTCTCGTAGTCTGTTTT
 
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rJMSF017E20+          TCCTAGAAATCTGCTATGAGAATCCCTTATGTTATTTTAGTGTATTCTGATCCCCCTTGG
rJMSF010H10+          TCCTAGAAATCTGCTATGAGAATCCCTTATGTTATTTTAGTGTATTCTGATCCCCCTTGG
JMFS093E06-           TCCTAGAAATCTGCTATGAGAATCCCTTATGTTATTTTAGTGTATTCTGATCCCCCTTGG
                      ____________________________________________________________
consensus             TCCTAGAAATCTGCTATGAGAATCCCTTATGTTATTTTAGTGTATTCTGATCCCCCTTGG
 
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rJMSF017E20+          TAGTGAAATGCT                                                
rJMSF010H10+          TAGTGAAATGCT                                                
JMFS093E06-           TAGTGAAATGCTATGACTAATGCATGCTCTATATATCCATACTCATTTTGGTCAGTTTGA
                      ____________________________________________________________
consensus             TAGTGAAATGCTATGACTAATGCATGCTCTATATATCCATACTCATTTTGGTCAGTTTGA