Contig 006261:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS024F06Sequence616006261 (4)emb|CDP04909.1|2e-140unnamed protein product [Coffea canephora]
JMFS081E07Sequence611006261 (4)ref|XP_009601814.1|306PREDICTED: uncharacterized protein LOC104097020 [Nicotiana tomentosiformis]
JMFS103H12Sequence545006261 (4)ref|XP_009601814.1|327PREDICTED: uncharacterized protein LOC104097020 [Nicotiana tomentosiformis]
JMFS155E08Sequence598006261 (4)ref|XP_006347613.1|357PREDICTED: uncharacterized protein LOC102593889 [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+                                                                  TGAGA
                      ____________________________________________________________
consensus                                                                    TGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           AACAGGCATCCGAGGGGTTTCTGGTGCAGGTTGGTAAGGATGTGTAAAAGGCTCCCCGGT
                      ____________________________________________________________
consensus             AACAGGCATCCGAGGGGTTTCTGGTGCAGGTTGGTAAGGATGTGTAAAAGGCTCCCCGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           TACAAAAGGATGCTTTGAAGCCTGCAAAGGCGACCACCGTTTTGCCGGATCAAACTCAAC
                      ____________________________________________________________
consensus             TACAAAAGGATGCTTTGAAGCCTGCAAAGGCGACCACCGTTTTGCCGGATCAAACTCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           AAGTCCCCTCAAGAAATCAATCAGTGCTAACCGAATTTGGTTCTCTTTAATAATATCTTC
                      ____________________________________________________________
consensus             AAGTCCCCTCAAGAAATCAATCAGTGCTAACCGAATTTGGTTCTCTTTAATAATATCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           CTCTGGTAAATTCTTCTTGTAAGGGTATTTTCTCACAATTGCTTCAAGGTTCATATGATT
JMFS155E08+                                       TTTCTCACAATTGCTCAAGGGTTCATATGATT
                      ____________________________________________________________
consensus             CTCTGGTAAATTCTTCTTGTAAGGGTATTTTCTCACAATTGCTTCAGGGTTCATATGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           GAAGTACTCCTTCCCTAGTACAGGCTTTTTCAGCTCTCTCGCTTCATATTCCTCTTCAGT
JMFS155E08+           GAAGTACTCCTTCCCTAGTACAGGCTTTTTCAGCTCTCTCGCTTCATATTCCTCTTCAGT
                      ____________________________________________________________
consensus             GAAGTACTCCTTCCCTAGTACAGGCTTTTTCAGCTCTCTCGCTTCATATTCCTCTTCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           CAAAGCTTGGTATATGCTACTACATCTATTCATAGTATGTTGGCTGCTCTCTTCGTAGCT
JMFS155E08+           CAAAGCTTGGTATATGCTACTACATCTATTCATAGTATGTTGGCTGCTCTCTTCGTAGCT
                      ____________________________________________________________
consensus             CAAAGCTTGGTATATGCTACTACATCTATTCATAGTATGTTGGCTGCTCTCTTCGTAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           AACACTCCCGACGCATTTGAAGAACTTGCTAGTATTTTTGGCTTCCTTCAGTAAATAATC
JMFS155E08+           AACACTCCCGACGCATTTGAAGAACTTGCTAGTATTTTTGGCTTCCTTCAGTAAATAATC
JMFS024F06+                                GAACTTGCTAGTATTTTTGGCTTCCTTCAGTAAATAATC
                      ____________________________________________________________
consensus             AACACTCCCGACGCATTTGAAGAACTTGCTAGTATTTTTGGCTTCCTTCAGTAAATAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           AGGGGGTTGACCACCTAGTATTTTGATCATCCTCTTCAGAAGATCAAATTCAGAAGCTCC
JMFS155E08+           AGGGGGTTGACCACCTAGTATTTTGATCATCCTCTTCAGAAGATCAAATTCAGAAGCTCC
JMFS024F06+           AGGGGGTTGACCACCTAGTATTTTGATCATCCTCTTCAGAAGATCAAATTCAGAAGCTCC
                      ____________________________________________________________
consensus             AGGGGGTTGACCACCTAGTATTTTGATCATCCTCTTCAGAAGATCAAATTCAGAAGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS103H12+           TGGGAACAATGGAAGTCCCAGAAACAACTCAGCCACTATGCAGCCAAATGACCACATGTC
JMFS155E08+           TGGGAACAATGGAAGTCCCAGAAACAACTCAGCCACTATGCAGCCAAATGACCACATGTC
JMFS024F06+           TGGGAACAATGGAAGTCCCAGAAACAACTCAGCCACTATGCAGCCAAATGACCACATGTC
                      ____________________________________________________________
consensus             TGGGAACAATGGAAGTCCCAGAAACAACTCAGCCACTATGCAGCCAAATGACCACATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS155E08+           GATAGCAGTAGTATATTGATACCCAAGTAGAACTTCAGGTGACCGATAGTACCGACTCTG
JMFS024F06+           GATAGCAGTAGTATATTGATACCCAAGTAGAACTTCAGGTGACCGATAGTACCGACTCTG
                      ____________________________________________________________
consensus             GATAGCAGTAGTATATTGATACCCAAGTAGAACTTCAGGTGACCGATAGTACCGACTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS155E08+           AATATAGGAGTATACAGTTCGATCTTCCATGCATGCTGATCCAAAGTCAATTATTTTCAC
JMFS024F06+           AATATAGGAGTATACAGTTCGATCTTCCATGCATGCTGATCCAAAGTCAATTATTTTCAC
                      ____________________________________________________________
consensus             AATATAGGAGTATACAGTTCGATCTTCCATGCATGCTGATCCAAAGTCAATTATTTTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS155E08+           TTCAGCAGGCTTTACTCTTGTGCATAACAGAATGTTCTCAGGCTTCAGATCACAATGGAT
JMFS024F06+           TTCAGCAGGCTTTACTCTTGTGCATAACAGAATGTTCTCAGGCTTCAGATCACAATGGAT
                      ____________________________________________________________
consensus             TTCAGCAGGCTTTACTCTTGTGCATAACAGAATGTTCTCAGGCTTCAGATCACAATGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS155E08+           TATACCAGCATCTTTCATAAGAGCTAATCCACATAAGATCTGCTTTGAAAACAACTGAAC
JMFS024F06+           TATACCAGCATCTTTCATAAGAGCTAATCCACATAAGATCTGCTTTGAAAACAACTGAAC
                      ____________________________________________________________
consensus             TATACCAGCATCTTTCATAAGAGCTAATCCACATAAGATCTGCTTTGAAAACAACTGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS155E08+           AATACTTAATGGCAATCCCCTAAAAT                                  
JMFS024F06+           AATACTTAATGGCAATCCCCTAAAATGATTCAACTTTATAAGCTCATACAAATTAGTATC
JMFS081E07+                                                            AAATTAGTATC
                      ____________________________________________________________
consensus             AATACTTAATGGCAATCCCCTAAAATGATTCAACTTTATAAGCTCATACAAATTAGTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024F06+           TAGCAGTTCAAAAGCAATGCACAAGTGTCTTTGATACACAAAGTAATCATAAATGCGAAC
JMFS081E07+           TAGCAGTTCAAAAGCAATGCACAAGTGTCTTTGATACACAAAGTAATCATAAATGCGAAC
                      ____________________________________________________________
consensus             TAGCAGTTCAAAAGCAATGCACAAGTGTCTTTGATACACAAAGTAATCATAAATGCGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024F06+           TATATGATGCTTATCCTCAGGATCAAACTTCTTATTCAATGTTGTCAGGATAGAAACTTC
JMFS081E07+           TATATGATGCTTATCCTCAGGATCAAACTTCTTATTCAATGTTGTCAGGATAGAAACTTC
                      ____________________________________________________________
consensus             TATATGATGCTTATCCTCAGGATCAAACTTCTTATTCAATGTTGTCAGGATAGAAACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024F06+           AACAAGTGCTTGTTGATAATATGCTGGTTGGTTTTTG                       
JMFS081E07+           AACAAGTGCTTGTTGATAATATGCTGGTTGGTTTTTGATGACTTTCACAGCAAGAAAACT
                      ____________________________________________________________
consensus             AACAAGTGCTTGTTGATAATATGCTGGTTGGTTTTTGATGACTTTCACAGCAAGAAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           ATTTGTTTCTGTAACCCAGCATTTAGCAACCTGCCCAAAGGTACCATGCCCAAGAATTTC
                      ____________________________________________________________
consensus             ATTTGTTTCTGTAACCCAGCATTTAGCAACCTGCCCAAAGGTACCATGCCCAAGAATTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           TTTGACAATGTACCTTCTTTGAGTGTCTAAATTGACCAACTCAAGATTGCAAAACAGAAT
                      ____________________________________________________________
consensus             TTTGACAATGTACCTTCTTTGAGTGTCTAAATTGACCAACTCAAGATTGCAAAACAGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           GAGGTCTGAATTAGCATTATCATGGCCGTCATTCAACACTCCAGCAGAAGGGGTTGTAAG
                      ____________________________________________________________
consensus             GAGGTCTGAATTAGCATTATCATGGCCGTCATTCAACACTCCAGCAGAAGGGGTTGTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           GAATCTCTTTGGATTCAATTCCTCTGAATATTGGAACTGAGGATTGCATATGCGGTACGT
                      ____________________________________________________________
consensus             GAATCTCTTTGGATTCAATTCCTCTGAATATTGGAACTGAGGATTGCATATGCGGTACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           TTCAACAATGTCCTTGGTTAATCTTGTCACCAAAGGTCTTCTAACAACCACACGCAAGCT
                      ____________________________________________________________
consensus             TTCAACAATGTCCTTGGTTAATCTTGTCACCAAAGGTCTTCTAACAACCACACGCAAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           TTTGGGCTTATCATCCCGAACACATTTTGAAAATGGAATGAAGGCAAGTTGGCTAGGACG
                      ____________________________________________________________
consensus             TTTGGGCTTATCATCCCGAACACATTTTGAAAATGGAATGAAGGCAAGTTGGCTAGGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS081E07+           CCATGGTGTAGTGGCTGGTGCCACAGATGATGGCGATGCTAAGGAGGAGCTACTTTGGGG
                      ____________________________________________________________
consensus             CCATGGTGTAGTGGCTGGTGCCACAGATGATGGCGATGCTAAGGAGGAGCTACTTTGGGG