Contig 006259:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS080G05Sequence640006259 (4)ref|XP_011079403.1|1e-85PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Sesamum indicum]
JMSF011A12Sequence216010612 (6)727006259 (4)ref|XP_009787244.1|1e-119PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana sylvestris
JMSF014P23Sequence234010612 (6)gb|KDP38683.1|6e-08hypothetical protein JCGZ_04036 [Jatropha curcas]720006259 (4)ref|XP_009787244.1|3e-98PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana sylvestris
JMSF022L12Sequence697010612 (6)ref|XP_006343649.1|3e-95PREDICTED: probable cyclic nucleotide-gated ion channel 5-like isoform X1 [Sola781006259 (4)ref|XP_009616554.1|4e-134PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana tomentosif

Alignment

This contig is upended


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rJMSF022L12+                        TTCGAGAATATGGATGAGAGATTGCTCGATGCCATTTGTGAACGCC
                      ____________________________________________________________
consensus                           TTCGAGAATATGGATGAGAGATTGCTCGATGCCATTTGTGAACGCC
 
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rJMSF011A12+                 TTGCCTGTACATTGAGAATACATACATTGTTCGAGAAGGAGATCCAGTTGATG
rJMSF022L12+          TGAAACCTTGCCTGTACATTGAGAATACATACATTGTTCGAGAAGGAGATCCAGTTGATG
rJMSF014P23+                           ATTGAGAATACATACATTGTTCGAGAAGGAGATCCAGTTGATG
                      ____________________________________________________________
consensus             TGAAACCTTGCCTGTACATTGAGAATACATACATTGTTCGAGAAGGAGATCCAGTTGATG
 
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rJMSF011A12+          AAATGCTCTTTATCATACGGGGTCGCCTTGAGAGTGTGACAACTGATGGCGGGAGAAGCG
rJMSF022L12+          AAATGCTCTTTATCATACGGGGTCGCCTTGAGAGTGTGACAACTGATGGCGGGAGAAGCG
rJMSF014P23+          NAATGCTCNTTATCATACGGGGTCGCCTTGAGAGTGTGACAACTGATGGCGGGAGAAGCG
                      ____________________________________________________________
consensus             AAATGCTCTTTATCATACGGGGTCGCCTTGAGAGTGTGACAACTGATGGCGGGAGAAGCG
 
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rJMSF011A12+          GGTTTTTCAACCGTAGTTTGTTAAAAGAGGGAGACTTTTGCGGCGAGGAGCTCCTGACCT
rJMSF022L12+          GGTTTTTCAACCGTAGTTTGTTAAAAGAGGGAGACTTTTGCGGCGAGGAGCTCCTGACCT
rJMSF014P23+          GGTTTTTCAACCGTAGTTTGTTAAAAGAGGGAGACTTTTGCGGNGAGGAGCTCCTGACCT
JMFS080G05-                               TTAAAAGAGGGAGACTTTTGCGGCGAGGAGCTCCTGACCT
                      ____________________________________________________________
consensus             GGTTTTTCAACCGTAGTTTGTTAAAAGAGGGAGACTTTTGCGGCGAGGAGCTCCTGACCT
 
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rJMSF011A12+          GGGCGCTAGACCCCAAATCTGGCGTCAATCTCCCATCCTCGACTCGCACAGTGAAGGCTT
rJMSF022L12+          GGGCGCTAGACCCCAAATCTGGCGTCAATCTCCCATCCTCGACTCGCACAGTGAAGGCTT
rJMSF014P23+          GGGCGCTAGACCCCAAATCTGGCGTCAATCTCCCATCCTCGACTNGCACAGTGAAGGCTT
JMFS080G05-           GGGCGCTAGACCCCAAATCTGGCGTCAATCTCCCATCCTCGACTCGCACAGTGAAGGCTT
                      ____________________________________________________________
consensus             GGGCGCTAGACCCCAAATCTGGCGTCAATCTCCCATCCTCGACTCGCACAGTGAAGGCTT
 
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rJMSF011A12+          TAACAGAGGTGGAGGCTTTCGCCCTGGCAGCTGACGAGCTGAAATTCGTCGCCAGCCAAT
rJMSF022L12+          TAACAGAGGTGGAGGCTTTCGCCCTGGCAGCTGACGAGCTGAAATTCGTCGCCAGCCAAT
rJMSF014P23+          TAACAGAGGTGGNGGCTTTNGCCCTGGCAGCTGACGAGCTGAAATTCGTCGCCAGCCAAT
JMFS080G05-           TAACAGAGGTGGAGGCTTTCGCCCTGGCAGCTGACGAGCTGAAATTCGTCGCCAGCCAAT
                      ____________________________________________________________
consensus             TAACAGAGGTGGAGGCTTTCGCCCTGGCAGCTGACGAGCTGAAATTCGTCGCCAGCCAAT
 
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rJMSF011A12+          TCAGACGCCTCCACAGCAGGCAGGTCCAACACACCTTCCGGTTTTACTCGCAGCAATGGA
rJMSF022L12+          TCAGACGCCTCCACAGCAGGCAGGTCCAACACACCTTCCGGTTTTACTCGCAGCAATGGA
rJMSF014P23+          TCAGACGCCTCCACAGCAGGCAGGTCCAACACACCTTCCGGTTTTACTCGCAGCAATGGA
JMFS080G05-           TCAGACGCCTCCACAGCAGGCAGGTCCAACACACCTTCCGGTTTTACTCGCAGCAATGGA
                      ____________________________________________________________
consensus             TCAGACGCCTCCACAGCAGGCAGGTCCAACACACCTTCCGGTTTTACTCGCAGCAATGGA
 
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rJMSF011A12+          GGACTTGGGCCGCCTGTTTCATCCAAGCAGCATGGCGGCGCTACATCAAGAGGAAACTCA
rJMSF022L12+          GGACTTGGGCCGCCTGTTTCATCCAAGCAGCATGGCGGCGCTACATCAAGAGGAAACTCA
rJMSF014P23+          GGACTTGGGCCGCCTGTTTCATCCAAGCAGCATGGCGGCGCTACATCAAGAGGAAACTCA
JMFS080G05-           GGACTTGGGCCGCCTGTTTCATCCAAGCAGCATGGCGGCGCTACATCAAGAGGAAACTCA
                      ____________________________________________________________
consensus             GGACTTGGGCCGCCTGTTTCATCCAAGCAGCATGGCGGCGCTACATCAAGAGGAAACTCA
 
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rJMSF011A12+          TGGAGCTTCAAAGAAAGGAGGAAGAAGCCGAGGAGTTGGCTAAAGCCGCTAGCCAAGCTA
rJMSF022L12+          TGGAGCTTCAAAGAAAGGAGGAAGAAGCCGAGGAGTTGGCTAAAGCCGCTAGCCAAGCTA
rJMSF014P23+          TGGAGCTTCAAAGAAAGGAGGAAGAAGCCGAGGAGTTGGCTAAAGCCGCTAGCCAAGCTA
JMFS080G05-           TGGAGCTTCAAAGAAAGGAGGAAGAAGCCGAGGAGTTGGCTAAAGCCGCTAGCCAAGCTA
                      ____________________________________________________________
consensus             TGGAGCTTCAAAGAAAGGAGGAAGAAGCCGAGGAGTTGGCTAAAGCCGCTAGCCAAGCTA
 
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rJMSF011A12+          GCGGTGGTACCTACAGCATTCGTGCAACCTTTTTGGCATCGAAGTTTGCCGCCAATGCTC
rJMSF022L12+          GCGGTGGTACCTACAGCATTCGTGCAACCTTTTTGGCATCGAAGTTTGCCGCCAATGCTC
rJMSF014P23+          GCGGTGGTACCTACAGCATTCGTGCAACCTTTTTGGCATCGAAGTTTGCCGCCAATGCTC
JMFS080G05-           GCGGTGGTACCTACAGCATTCGTGCAACCTTTTTGGCATCGAAGTTTGCCGCCAATGCTC
                      ____________________________________________________________
consensus             GCGGTGGTACCTACAGCATTCGTGCAACCTTTTTGGCATCGAAGTTTGCCGCCAATGCTC
 
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rJMSF011A12+          TCCGCGGCGTTCATAGGAACCGCAACCTTAAGAGTGCGAGGGAATTGGTGAAGCTGCAGA
rJMSF022L12+          TCCGCGGCGTTCATAGGAACCGCAACCTTAAGAGTGCGAGGGAATTGGTGAAGCTGCAGA
rJMSF014P23+          TCCGCGGCGTTCATAGGAACCGCAACCTTAAGAGTGCGAGGGAATTGGTGAAGCTGCAGA
JMFS080G05-           TCCGCGGCGTTCATAGGAACCGCAACCTTAAGAGTGCGAGGGAATTGGTGAAGCTGCAGA
                      ____________________________________________________________
consensus             TCCGCGGCGTTCATAGGAACCGCAACCTTAAGAGTGCGAGGGAATTGGTGAAGCTGCAGA
 
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rJMSF011A12+          AACCCCCAGAACCTGATTTTAGTGCAGATGCAGATTAGTTAATCAACTTCCTTACTGATC
rJMSF022L12+          AACCCCCAGAACCTGATTTTAGTGCAGATGCAGATTAGTTAATCAACTTCCTTACTGATC
rJMSF014P23+          AACCCCCAGAACCTGATTTTAGTGCAGATGCAGATTAGTTAATCAACTTCCTTACTGATC
JMFS080G05-           AACCCCCAGAACCTGATTTTAGTGCAGATGCAGATTAGTTAATCAACTTCCTTACTGATC
                      ____________________________________________________________
consensus             AACCCCCAGAACCTGATTTTAGTGCAGATGCAGATTAGTTAATCAACTTCCTTACTGATC
 
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rJMSF011A12+          TTGTGTGCTTGCAATGGGCCAAGTATGTATAATAGGATGTCACATTGTTGTAGCTCTCAT
rJMSF022L12+          TTGTGTGCTTGCAATGGGCCAAGTATGTATAATAGGATGTCACATTGTTGTAGCTCTCAT
rJMSF014P23+          TTGTGTGCTTGCAATGGGCCAAGTATGTATAATAGGATGTCACATTGTTGTAGCTCTCAT
JMFS080G05-           TTGTGTGCTTGCAATGGGCCAAGTATGTATAATAGGATGTCACATTGTTGTAGCTCTCAT
                      ____________________________________________________________
consensus             TTGTGTGCTTGCAATGGGCCAAGTATGTATAATAGGATGTCACATTGTTGTAGCTCTCAT
 
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rJMSF011A12+          GTTTCTGG                                                    
rJMSF022L12+          GTTTCTGG                                                    
rJMSF014P23+          GTTTCTGG                                                    
JMFS080G05-           GTTTCTGGNCATTACTGNATTTTATAACTATATATATTATATATATACATATTTGCTTTT
                      ____________________________________________________________
consensus             GTTTCTGGNCATTACTGNATTTTATAACTATATATATTATATATATACATATTTGCTTTT