Contig 006244:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF048H01-                                 TTGGGATTGTAGTGTTCAAATTAACACCAATAGTAGG
                      ____________________________________________________________
consensus                                    TTGGGATTGTAGTGTTCAAATTAACACCAATAGTAGG
 
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rJMSF048H01-          TAAAATATTTTACAACTTAACATGCTTAGCAAAGCTCAGAGCTTGAATAACACAGCTATA
                      ____________________________________________________________
consensus             TAAAATATTTTACAACTTAACATGCTTAGCAAAGCTCAGAGCTTGAATAACACAGCTATA
 
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rJMSF048H01-          CAAAACATTGAAAAATGGCATATTTTCTCTTTGCTTATTACCCAATCAGAAAAGAACATT
                      ____________________________________________________________
consensus             CAAAACATTGAAAAATGGCATATTTTCTCTTTGCTTATTACCCAATCAGAAAAGAACATT
 
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rJMSF048H01-          ATTGCCTCCCCACTCCCCAGTAACCTGTCAACTTCACAGCTCTAACAAAGCTCTTGTAGC
                      ____________________________________________________________
consensus             ATTGCCTCCCCACTCCCCAGTAACCTGTCAACTTCACAGCTCTAACAAAGCTCTTGTAGC
 
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rJMSF048H01-          CATTTCTCCTTGAAGTACTCCCGAAAAAACGTAAAGCCCTAAAATACTAAATGTCTATAA
                      ____________________________________________________________
consensus             CATTTCTCCTTGAAGTACTCCCGAAAAAACGTAAAGCCCTAAAATACTAAATGTCTATAA
 
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rJMSF048H01-          TCAATCTTTTGTCGCCGTCTCTATCAAGATGCTTGTATGAGTTCTTTGATGTCATATCCT
                      ____________________________________________________________
consensus             TCAATCTTTTGTCGCCGTCTCTATCAAGATGCTTGTATGAGTTCTTTGATGTCATATCCT
 
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rJMSF048H01-          TGGAGCTGAAGGAAGGTCAGAAGCAAAATAACTCCGGAGTTCCAAAAAGCATGAATAGTA
                      ____________________________________________________________
consensus             TGGAGCTGAAGGAAGGTCAGAAGCAAAATAACTCCGGAGTTCCAAAAAGCATGAATAGTA
 
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rJMSF048H01-          ATTGGTGTAAGTAGATTTCGGGTTTGAGCATATGAAAATCCTAATGCAGTACCGAGTACA
                      ____________________________________________________________
consensus             ATTGGTGTAAGTAGATTTCGGGTTTGAGCATATGAAAATCCTAATGCAGTACCGAGTACA
 
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rJMSF048H01-          AAAAGCTGAGGGAATTCTCCCGGTGTCAAATGTGCAGCAGAAAATACAGCAGCGCTGATA
                      ____________________________________________________________
consensus             AAAAGCTGAGGGAATTCTCCCGGTGTCAAATGTGCAGCAGAAAATACAGCAGCGCTGATA
 
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rJMSF048H01-          AGGACAGCAAGTGGGCTAGGCAGCCACTTCGTCAGGGATACCATCAAAAAGCCTCTAAAC
                      ____________________________________________________________
consensus             AGGACAGCAAGTGGGCTAGGCAGCCACTTCGTCAGGGATACCATCAAAAAGCCTCTAAAC
 
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rJMSF048H01-          ACCGTCTCCTCAAGAACTGGTGCAAGGACGCCAGTGATACCCAATAGACTCAGAGTGCTG
                      ____________________________________________________________
consensus             ACCGTCTCCTCAAGAACTGGTGCAAGGACGCCAGTGATACCCAATAGACTCAGAGTGCTG
 
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rJMSF048H01-          ATGCTTGAAGAGCCAATCAATGGAAGCAAGCGAACTAGAGCATCAGTCTCTCTTGTCGGG
JMSF048H01+                                                                 GTCGGG
                      ____________________________________________________________
consensus             ATGCTTGAAGAGCCAATCAATGGAAGCAAGCGAACTAGAGCATCAGTCTCTCTTGTCGGG
 
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rJMSF048H01-          GGTTCACTATTCAAAGAAGACATGGCAACTCCTGTCAGTGCAATAGCAGCCAGTGCTCCA
JMSF048H01+           GGTTCACTATTCAAAGAAGACATGGCAACTCCTGTCAGTGCAATAGCAGCCAGTGCTCCA
JMFS063F12+                                   GCAACTCCTGTCAGTGCAATAGCAGCCAGTGCTCCA
JMFS070C02+                                   GCAACTCCTGTCAGTGCAATAGCAGCCAGTGCTCCA
                      ____________________________________________________________
consensus             GGTTCACTATTCAAAGAAGACATGGCAACTCCTGTCAGTGCAATAGCAGCCAGTGCTCCA
 
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rJMSF048H01-          GCAAGACCAATTGCTGCC                                          
JMSF048H01+           GCAAGACCAATTGCTGCCCAAAACAGCCAACCTCTTTGAAGATTGAATGGCTCCCTCCAA
JMFS063F12+           GCAAGACCAATTGCTGCCCACAACAGCCAACCTCTTTGAAGATTGAATGGCTCCCTCCAA
JMFS070C02+           GCAAGACCAATTGCTGCCCACAACAGCCAACCTCTTTGAAGATTGAATGGCTCCCTCCAA
                      ____________________________________________________________
consensus             GCAAGACCAATTGCTGCCCACAACAGCCAACCTCTTTGAAGATTGAATGGCTCCCTCCAA
 
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JMSF048H01+           TCATAACAATATATGTCATTGGGAAGCGGCTTAGATGACTTGGTCAGGGTATAGAGAACT
JMFS063F12+           TCATAACAATATATGTCATTGGGAAGCGGCTTAGATGACTTGGTCAGGGTATAGAGAACT
JMFS070C02+           TCATAACAATATATGTCATTGGGAAGCGGCTTAGATGACTTGGTCAGGGTATAGAGAACT
                      ____________________________________________________________
consensus             TCATAACAATATATGTCATTGGGAAGCGGCTTAGATGACTTGGTCAGGGTATAGAGAACT
 
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JMSF048H01+           CCAAGAACAATTGCAGTTGTAATAGCTTGGTCTAGAAACAAAATTTCTGCCTTCTCATCC
JMFS063F12+           CCAAGAACAATTGCAGTTGTAATAGCTTGGTCTAGAAACAAAATTTCTGCCTTCTCATCC
JMFS070C02+           CCAAGAACAATTGCAGTTGTAATAGCTTGGTCTAGAAACAAAATTTCTGCCTTCTCATCC
                      ____________________________________________________________
consensus             CCAAGAACAATTGCAGTTGTAATAGCTTGGTCTAGAAACAAAATTTCTGCCTTCTCATCC
 
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JMSF048H01+           AAGCTTAGTTCTTCAACCTGAATTCCTGTGTACGGTATTGCTGCTGTCTCTATTAGTCCT
JMFS063F12+           AAGCTTAGTTCTTCAACCTGAATTCCTGTGTACGGTATTGCTGCTGTCTCTATTAGTCCT
JMFS070C02+           AAGCTTAGTTCTTCAACCTGAATTCCTGTGTACGGTATTGCTGCTGTCTCTATTAGTCCT
                      ____________________________________________________________
consensus             AAGCTTAGTTCTTCAACCTGAATTCCTGTGTACGGTATTGCTGCTGTCTCTATTAGTCCT
 
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JMSF048H01+           GTCAAAACAAAACTGAATCCACAAGCAAGGGAAGTAAGAGAAATAGTTTGCCAATTCCAT
JMFS063F12+           GTCAAAACAAAACTGAATCCACAAGCAAGGGAAGTAAGAGAAATAGTTTGCCAATTCCAT
JMFS070C02+           GTCAAAACAAAACTGAATCCACAAGCAAGGGAAGTAAGAGAAATAGTTTGCCAATTCCAT
                      ____________________________________________________________
consensus             GTCAAAACAAAACTGAATCCACAAGCAAGGGAAGTAAGAGAAATAGTTTGCCAATTCCAT
 
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JMSF048H01+           GGAACACTCCACCGTCTAAAAATTGGACAATTGGGTCCACTTCCTTTAGGGTCGGGTCGA
JMFS063F12+           GGAACACTCCACCGTCTAAAAATTGGACAATTGGGTCCACTTCCTTTAGGGTCGGGTCGA
JMFS070C02+           GGAACACTCCACCGTCTAAAAATTGGACAATTGGGTCCACTTCCTTTAGGGTCGGGTCGA
                      ____________________________________________________________
consensus             GGAACACTCCACCGTCTAAAAATTGGACAATTGGGTCCACTTCCTTTAGGGTCGGGTCGA
 
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JMSF048H01+           TTTCCGGATGAGTAAGAACAAACAGTAGTAGAGAAGCGCGGTCTGAGAGCTTGGTCGGTC
JMFS063F12+           TTTCCGGATGAGTAAGAACAAACAGTAGTAGAGAAGCGCGGTCTGAGAGCTTGGTCGGTC
JMFS070C02+           TTTCCGGATGAGTAAGAACAAACAGTAGTAGAGAAGCGCGGTCTGAGAGCTTGGTCGGTC
                      ____________________________________________________________
consensus             TTTCCGGATGAGTAAGAACAAACAGTAGTAGAGAAGCGCGGTCTGAGAGCTTGGTCGGTC
 
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JMSF048H01+           CGGCGAAATGAGAGCAATTGCAATTTCTGGGTCAGAGGCTTATATGGAAAAAGCTTTGGT
JMFS063F12+           CGGCGAAATGAGAGCAATTGCAATTTCTGGGTCAGAGGCTTATATGGAAAAAGCTTTGGT
JMFS070C02+           CGGCGAAATGAGAGCAATTGCAATTTCTGGGTCAGAGGCTTATATGGAAAAAGCTTTGGT
                      ____________________________________________________________
consensus             CGGCGAAATGAGAGCAATTGCAATTTCTGGGTCAGAGGCTTATATGGAAAAAGCTTTGGT
 
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JMSF048H01+           GAGAGTGATGCAATGGGAGCAGAGGGTCGAGCCAGAGAGACGTAGAACAACGCTGCTGCA
JMFS063F12+           GAGAGTGATGCAATGGGAGCAGAGGGTCGAGCCAGAGAGACGTAGAACAACGCTGCTGCA
JMFS070C02+           GAGAGTGATGCAATGGGAGCAGAGGGTCGAGCCAGAGAGACGTAGAACAACGCTGCTGCA
                      ____________________________________________________________
consensus             GAGAGTGATGCAATGGGAGCAGAGGGTCGAGCCAGAGAGACGTAGAACAACGCTGCTGCA
 
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JMSF048H01+           GCCATTTGGAGAATCGTAGGTTGAGAGATAAGGCAGATTAT                   
JMFS063F12+           GCCATTTGGAGAATCGTAGGTTGAGAGATAAGGCAGATTATGATCAAAGATTTGATTTTG
JMFS070C02+           GCCATTTGGAGAATCGTAGGTTGAGAGATAAGGCAGATTATGATCAAAGATTTGATTTTG
                      ____________________________________________________________
consensus             GCCATTTGGAGAATCGTAGGTTGAGAGATAAGGCAGATTATGATCAAAGATTTGATTTTG