Contig 006240:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039B05Sequence506006240 (3)ref|XP_009628623.1|1e-34PREDICTED: uncharacterized protein LOC104118935 isoform X3 [Nicotiana tomentosi692008185 (4)ref|XP_009779557.1|177PREDICTED: uncharacterized protein LOC104228725 [Nicotiana sylvestris]
JMFS067G04Sequence619006240 (3)ref|XP_009628623.1|2e-38PREDICTED: uncharacterized protein LOC104118935 isoform X3 [Nicotiana tomentosi
JMSF018L06Sequence531006240 (3)emb|CAN75994.1|2e-35hypothetical protein VITISV_005354 [Vitis vinifera]710008185 (4)ref|XP_009779557.1|236PREDICTED: uncharacterized protein LOC104228725 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS067G04+                                                    CCTCCAAATTTCATGTGAT
                      ____________________________________________________________
consensus                                                      CCTCCAAATTTCATGTGAT
 
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JMSF018L06+                                                    TCACCGAGATCAACATTGT
JMFS067G04+           TTACATGGTACGTTGGAGGAGGAGACGGCAACAACACATTCTCACCGAGATCAACATTGT
                      ____________________________________________________________
consensus             TTACATGGTACGTTGGAGGAGGAGACGGCAACAACACATTCTCACCGAGATCAACATTGT
 
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JMSF018L06+           GTGATTTAGACACCGAAGAGAAGGATCTTTCGGTCAATGCAAACAGTTCAGGCGTGGCGC
JMFF039B05+                     CACCGAAGAGAAGGATCTTTCGGTCAATGCAAACAGTTCAGGCGTGGCGN
JMFS067G04+           GTGATTTAGACACCGAAGAGAAGGATCTTTCGGTCAATGCAAACAGTTCAGGCGTGGCGC
                      ____________________________________________________________
consensus             GTGATTTAGACACCGAAGAGAAGGATCTTTCGGTCAATGCAAACAGTTCAGGCGTGGCGC
 
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JMSF018L06+           TAGTGGAAGTATAGATTGAAGATTCAATTGGGTGGGGGGCTTCAGGTTCAACAAATTTCC
JMFF039B05+           TAGTGGAAGTATAGATTGAAGATTCAATTGGGTGGGGGGCTTCAGGTTCAACAAATTTCC
JMFS067G04+           TAGTGGAAGTATAGATTGAAGATTCAATTGGGTGGGGGGCTTCAGGTTCAACAAATTTCC
                      ____________________________________________________________
consensus             TAGTGGAAGTATAGATTGAAGATTCAATTGGGTGGGGGGCTTCAGGTTCAACAAATTTCC
 
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JMSF018L06+           TCAGAGCAATTCCTGTCATTTTCAATGCCTCTATATAACCAACATGAGTTGCTGCTAAAG
JMFF039B05+           TCAGAGCAATTCCTGTCATTTTCAATGCCTCTATATAACCAACATGAGTTGCTGCTAAAG
JMFS067G04+           TCAGAGCAATTCCTGTCATTTTCAATGCCTCTATATAACCAACATGAGTTGCTGCTAAAG
                      ____________________________________________________________
consensus             TCAGAGCAATTCCTGTCATTTTCAATGCCTCTATATAACCAACATGAGTTGCTGCTAAAG
 
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JMSF018L06+           AACACCTCCCATCAAGTGCTTGTCTAACAAATTTTTTCCTTTCTCTGCAAATCTGTAAGG
JMFF039B05+           AACACCTCCCATCAAGTGCTTGTCTAACAAATTTTTTCCTTTCTCTGCAAATCTGTAAGG
JMFS067G04+           AACACCTCCCATCAAGTGCTTGTCTAACAAATTTTTTCCTTTCTCTGCAAATCTGTAAGG
                      ____________________________________________________________
consensus             AACACCTCCCATCAAGTGCTTGTCTAACAAATTTTTTCCTTTCTCTGCAAATCTGTAAGG
 
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JMSF018L06+           CTTTATCTTCTTCAACCCTAGAATTAGCAGCCCCCATTAAACTATACCCCAAACTCAACC
JMFF039B05+           CTTTATCTTCTTCAACCCTAGAATTAGCAGCCCCCATTAAACTATACCCCAAACTCAACC
JMFS067G04+           CTTTATCTTCTTCAACCCTAGAATTAGCAGCCCCCATTAAACTATACCCCAAACTCAACC
                      ____________________________________________________________
consensus             CTTTATCTTCTTCAACCCTAGAATTAGCAGCCCCCATTAAACTATACCCCAAACTCAACC
 
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JMSF018L06+           CTCTACAATTATCATTAATTCATCTACCAAATCAATAAATTCCTCAACTTCCCCAGGGCT
JMFF039B05+           CTCTACAATTATCATTAATTCATCTACCAAATCAATAAATTCCTCAACTTCCCCAGGGCT
JMFS067G04+           CTCTACAATTATCATTAATTCATCTACCAAATCAATAAATTCCTCAACTTCCCCAGGGCT
                      ____________________________________________________________
consensus             CTCTACAATTATCATTAATTCATCTACCAAATCAATAAATTCCTCAACTTCCCCAGGGCT
 
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JMSF018L06+           C                                                           
JMFF039B05+           C                                                           
JMFS067G04+           CTGTCACAAAATTCAACAACCCAAACATCAACCATATGCATTACAGGGCTAAAACCCAAA
                      ____________________________________________________________
consensus             CTGTCACAAAATTCAACAACCCAAACATCAACCATATGCATTACAGGGCTAAAACCCAAA
 
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JMFS067G04+           CAGAAACCACCAAAATAAGAGATTAATGATCCAACAAAGAATTGAAGTCGAACCCAAAAT
                      ____________________________________________________________
consensus             CAGAAACCACCAAAATAAGAGATTAATGATCCAACAAAGAATTGAAGTCGAACCCAAAAT
 
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JMFS067G04+           CAGACATAAAAAAAGCAATAACACATATAAGGATATTAATGAGTATTAGCTCAAATTCAA
                      ____________________________________________________________
consensus             CAGACATAAAAAAAGCAATAACACATATAAGGATATTAATGAGTATTAGCTCAAATTCAA