Contig 006239:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS067C01Sequence638006239 (4)ref|XP_006338247.1|8e-38PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Solanum tuber
JMFS077G02Sequence601006239 (4)ref|XP_006338247.1|5e-38PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Solanum tuber
JMFS105C07Sequence620006239 (4)ref|XP_006338247.1|6e-47PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Solanum tuber
JMFS118F02Sequence627006239 (4)ref|XP_006338247.1|5e-38PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Solanum tuber

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+             TGCAAGGTCGGTGGATTCATTAATGGCGCCGGAAAATTCACCGCCTCCCTCATCATCA
                      ____________________________________________________________
consensus               TGCAAGGTCGGTGGATTCATTAATGGCGCCGGAAAATTCACCGCCTCCCTCATCATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           TTCATCCGCTCCGAACTACTAGATTCACCGTACGGAATACAACCGCTATTACTGGGCGCG
JMFS118F02+                                 ATTCACCGTACGGAATACAACCGCTATTACTGGGCGCG
JMFS077G02+                                                                    GCG
JMFS067C01+                                 ATTCACCGTACGGAATACAACCGCTATTACTGGGCGCG
                      ____________________________________________________________
consensus             TTCATCCGCTCCGAACTACTAGATTCACCGTACGGAATACAACCGCTATTACTGGGCGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           CTCTCGTCAATACCGCTAACCGAACTGGGAGAGAGAGTAGTCTCAGACCCTAAAGCTTCT
JMFS118F02+           CTCTCGTCAATACCGCTAACCGAACTGGGAGAGAGAGTAGTCTCAGACCCTAAAGCTTCT
JMFS077G02+           CTCTCGTCAATACCGCTAACCGAACTGGGAGAGAGAGTAGTCTCAGACCCTAAAGCTTCT
JMFS067C01+           CTCTCGTCAATACCGCTAACCGAACTGGGAGAGAGAGTAGTCTCAGACCCTAAAGCTTCT
                      ____________________________________________________________
consensus             CTCTCGTCAATACCGCTAACCGAACTGGGAGAGAGAGTAGTCTCAGACCCTAAAGCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           TCTTCTAGCTCTTTGCTAGCGGACTCGTCCTCGCACCCACTTTGCCGGTCAAACGCAATC
JMFS118F02+           TCTTCTAGCTCTTTGCTAGCGGACTCGTCCTCGCACCCACTTTGCCGGTCAAACGCAATC
JMFS077G02+           TCTTCTAGCTCTTTGCTAGCGGACTCGTCCTCGCACCCACTTTGCCGGTCAAACGCAATC
JMFS067C01+           TCTTCTAGCTCTTTGCTAGCGGACTCGTCCTCGCACCCACTTTGCCGGTCAAACGCAATC
                      ____________________________________________________________
consensus             TCTTCTAGCTCTTTGCTAGCGGACTCGTCCTCGCACCCACTTTGCCGGTCAAACGCAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           ACCGAGGTCGGGGAAACAGTGGAATTGGAGCTTCGCTTCAGCTCTTTCGAGAACCCTTTG
JMFS118F02+           ACCGAGGTCGGGGAAACAGTGGAATTGGAGCTTCGCTTCAGCTCTTTCGAGAACCCTTTG
JMFS077G02+           ACCGAGGTCGGGGAAACAGTGGAATTGGAGCTTCGCTTCAGCTCTTTCGAGAACCCTTTG
JMFS067C01+           ACCGAGGTCGGGGAAACAGTGGAATTGGAGCTTCGCTTCAGCTCTTTCGAGAACCCTTTG
                      ____________________________________________________________
consensus             ACCGAGGTCGGGGAAACAGTGGAATTGGAGCTTCGCTTCAGCTCTTTCGAGAACCCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           GCTACATCGTTAACGGAAATGGGCTGAACGATGGGCAATGAGAATTTACGAGATAAGGGC
JMFS118F02+           GCTACATCGTTAACGGAAATGGGCTGAACGATGGGCAATGAGAATTTACGAGATAAGGGC
JMFS077G02+           GCTACATCGTTAACGGAAATGGGCTGAACGATGGGCAATGAGAATTTACGAGATAAGGGC
JMFS067C01+           GCTACATCGTTAACGGAAATGGGCTGAACGATGGGCAATGAGAATTTACGAGATAAGGGC
                      ____________________________________________________________
consensus             GCTACATCGTTAACGGAAATGGGCTGAACGATGGGCAATGAGAATTTACGAGATAAGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           ATCTGGGAAACCACGGCCGCAACTGGAATCCTATCCACATTGATGGGTACAGCTCGAGGG
JMFS118F02+           ATCTGGGAAACCACGGCCGCAACTGGAATCCTATCCACATTGATGGGTACAGCTCGAGGG
JMFS077G02+           ATCTGGGAAACCACGGCCGCAACTGGAATCCTATCCACATTGATGGGTACAGCTCGAGGG
JMFS067C01+           ATCTGGGAAACCACGGCCGCAACTGGAATCCTATCCACATTGATGGGTACAGCTCGAGGG
                      ____________________________________________________________
consensus             ATCTGGGAAACCACGGCCGCAACTGGAATCCTATCCACATTGATGGGTACAGCTCGAGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           AGCTCATGGGCAATGGGTGGGCCATGGTACTCCATAGCAAAGGAGTACTCCACTCCTTCA
JMFS118F02+           AGCTCATGGGCAATGGGTGGGCCATGGTACTCCATAGCAAAGGAGTACTCCACTCCTTCA
JMFS077G02+           AGCTCATGGGCAATGGGTGGGCCATGGTACTCCATAGCAAAGGAGTACTCCACTCCTTCA
JMFS067C01+           AGCTCATGGGCAATGGGTGGGCCATGGTACTCCATAGCAAAGGAGTACTCCACTCCTTCA
                      ____________________________________________________________
consensus             AGCTCATGGGCAATGGGTGGGCCATGGTACTCCATAGCAAAGGAGTACTCCACTCCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           TCCACCACGGTGGTCGCCTTCTCCGGCGACATTTTTGTATTTTTCTACAACAAAAATCAA
JMFS118F02+           TCCACCACGGTGGTCGCCTTCTCCGGCGACATTTTTGTATTTTTCTACAACAAAAATCAA
JMFS077G02+           TCCACCACGGTGGTCGCCTTCTCCGGCGACATTTTTGTATTTTTCTACAACAAAAATCAA
JMFS067C01+           TCCACCACGGTGGTCGCCTTCTCCGGCGACATTTTTGTATTTTTCTACAACAAAAATCAA
                      ____________________________________________________________
consensus             TCCACCACGGTGGTCGCCTTCTCCGGCGACATTTTTGTATTTTTCTACAACAAAAATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           ATCTTTGAGCAGCTCCGTCAATCACATCATAGAAACAAGCACGCTTAACGCATTTAAGTA
JMFS118F02+           ATCTTTGAGCAGCTCCGTCAATCACATCATAGAAACAAGCACGCTTAACGCATTTAAGTA
JMFS077G02+           ATCTTTGAGCAGCTCCGTCAATCACATCATAGAAACAAGCACGCTTAACGCATTTAAGTA
JMFS067C01+           ATCTTTGAGCAGCTCCGTCAATCACATCATAGAAACAAGCACGCTTAACGCATTTAAGTA
                      ____________________________________________________________
consensus             ATCTTTGAGCAGCTCCGTCAATCACATCATAGAAACAAGCACGCTTAACGCATTTAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS105C07+           ACCCTAATATGAAATTTACTGC                                      
JMFS118F02+           ACCCTAATATGAAATTTACTGCAAAAAGATTGGAATTTGAGCAAGAATGGGAGTGGGTAG
JMFS077G02+           ACCCTAATATGAAATTTACTGCAAAAAGATTGGAATTTGAGCAAGAATGGGAGTGGGTAG
JMFS067C01+           ACCCTAATATGAAATTTACTGCAAAAAGATTGGAATTTGAGCAAGAATGGGAGTGGGTAG
                      ____________________________________________________________
consensus             ACCCTAATATGAAATTTACTGCAAAAAGATTGGAATTTGAGCAAGAATGGGAGTGGGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118F02+           AGTGAATAAACTTATAAACCTGCCGGAGGGAGGAGAGATGCG                  
JMFS077G02+           AGTGAATAAACTTATAAACCTGCCGGAGGGAGGAGAGATGCGTGAAGGAAAATCCAAG  
JMFS067C01+           AGTGAATAAACTTATAAACCTGCCGGAGGGAGGAGAGATGCGTGAAGGAAAATCCAAGAT
                      ____________________________________________________________
consensus             AGTGAATAAACTTATAAACCTGCCGGAGGGAGGAGAGATGCGTGAAGGAAAATCCAAGAT