Contig 006229:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046O16Sequence537006229 (4)ref|XP_008342079.1|2e-70PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Malus domestic459007675 (2)ref|XP_009784294.1|2e-49PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Nicotiana sylv
JMFS052B04Sequence586006229 (4)ref|XP_006357528.1|3e-13PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5-like [Solanum t
JMFS091D01Sequence616006229 (4)gb|KDO50773.1|2e-91hypothetical protein CISIN_1g007568mg [Citrus sinensis]
JMFS119C07Sequence643006229 (4)ref|XP_007043530.1|3e-38Indole-3-acetic acid-amido synthetase GH3.5 [Theobroma cacao] gb|EOX99361.1| Ind

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           GTAACCCCAGCAGGAGGTGACAGTACGTCGACTGCTTGTAGTCGCCGCTGGAAATCACCT
                      ____________________________________________________________
consensus             GTAACCCCAGCAGGAGGTGACAGTACGTCGACTGCTTGTAGTCGCCGCTGGAAATCACCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           CCTCCGGGCTGCAAGTAAACGACTTAATCTCCCGCTGCTTCACCTTAAACTCCTCGCTCG
                      ____________________________________________________________
consensus             CCTCCGGGCTGCAAGTAAACGACTTAATCTCCCGCTGCTTCACCTTAAACTCCTCGCTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           CGAAAATGTGTGTCGTCACCGTCGCCGCCGTCACTCCTCCCTTCGTCTTGAACTGCTTGC
JMFF046O16+                                 CGCCGCCGTCACTCCTCCCTTCGTCTTGAACTGCTGGC
                      ____________________________________________________________
consensus             CGAAAATGTGTGTCGTCACCGTCGCCGCCGTCACTCCTCCCTTCGTCTTGAACTGCTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           TGCTGTATATGAACTCCAGAATCCTCTTCCCTTCACTTGTCGGATAAATCCTGGATCTAA
JMFF046O16+           TGCTGTATATGAACTCCAGAATCCTCTTCCCTTCACTTGTCGGATAAATCCTGGATCTAA
                      ____________________________________________________________
consensus             TGCTGTATATGAACTCCAGAATCCTCTTCCCTTCACTTGTCGGATAAATCCTGGATCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           AAGCAGCTGCGAGCTTGGAGATTTGAAGGGTGGTTTGTGAGCTATGGCGAGTGAAGGGTA
JMFF046O16+           AAGCAGCTGCGAGCTTGGAGATTTGAAGGGTGGTTTGTGAGCTATGGCGAGTGAAGGGTA
                      ____________________________________________________________
consensus             AAGCAGCTGCGAGCTTGGAGATTTGAAGGGTGGTTTGTGAGCTATGGCGAGTGAAGGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           TAAACTTCTGTCGACCCTCTGTAGTTCCAGAACTTAAGGATAAGGTGGTGATGGGGTGGT
JMFF046O16+           TAAACTTCTGTCGACCCTCTGTAGTTCCAGAACTTAAGGATAAGGTGGTGATGGGGTGGT
JMFS119C07+            AAACTTCTGTCGACCCTCTGTAGTTCCAGAACTTAAGGATAAGGTGGTGATGGGGTGGT
                      ____________________________________________________________
consensus             TAAACTTCTGTCGACCCTCTGTAGTTCCAGAACTTAAGGATAAGGTGGTGATGGGGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           GAGTGAGGAGAGGGGCGGAGTCGCCGTCGGCAATCCGTTGAACGTAAGGCTCCAAATCTG
JMFF046O16+           GAGTGAGGAGAGGGGCGGAGTCGCCGTCGGCAATCCGTTGAACGTAAGGCTCCAAATCTG
JMFS119C07+           GAGTGAGGAGAGGGGCGGAGTCGCCGTCGGCAATCCGTTGAACGTAAGGCTCCAAATCTG
                      ____________________________________________________________
consensus             GAGTGAGGAGAGGGGCGGAGTCGCCGTCGGCAATCCGTTGAACGTAAGGCTCCAAATCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           CATGAGAAGAAAGAGGGACCAAAGAAGTGTAAAGGGATTCCAATAATGCGCCATCCTCCA
JMFF046O16+           CATGAGAAGAAAGAGGGACCAAAGAAGTGTAAAGGGATTCCAATAATGCGCCATCCTCCA
JMFS119C07+           CATGAGAAGAAAGAGGGACCAAAGAAGTGTAAAGGGATTCCAATAATGCGCCATCCTCCA
                      ____________________________________________________________
consensus             CATGAGAAGAAAGAGGGACCAAAGAAGTGTAAAGGGATTCCAATAATGCGCCATCCTCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           CATTCATATCTTTATCTCCCACCCATTTCTTCAGATACTCCACGCCGTGGTTCAGTTCAA
JMFF046O16+           CATTCATATCTTTATCTCCCACCCATTTCTTCAGATACTCCACGCCGTGGTTCAGTTCAA
JMFS119C07+           CATTCATATCTTTATCTCCCACCCATTTCTTCAGATACTCCACGCCGTGGTTCAGTTCAA
JMFS052B04+                        ATCTCCCACCCATTTCTTCAGATACTCCACGCCGTGGTTCAGTTCAA
                      ____________________________________________________________
consensus             CATTCATATCTTTATCTCCCACCCATTTCTTCAGATACTCCACGCCGTGGTTCAGTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           CAATCCGCCGGAGCGTCTCCCTCTGGACCTGCCCGGCGTTCTCCGCCACCTCGTCGAACC
JMFF046O16+           CAATCCGCCGGAGCGTCTCCCTCTGGACCTGCCCGGCGTTCTCCGCCACCTCGTCGAACC
JMFS119C07+           CAATCCGCCGGAGCGTCTCCCTCTGGACCTGCCCGGCGTTCTCCGCCACCTCGTCGAACC
JMFS052B04+           CAATCCGCCGGAGCGTCTCCCTCTGGACCTGCCCGGCGTTCTCCGCCACCTCGTCGAACC
                      ____________________________________________________________
consensus             CAATCCGCCGGAGCGTCTCCCTCTGGACCTGCCCGGCGTTCTCCGCCACCTCGTCGAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091D01+           ACCGGATTATGTCGCA                                            
JMFF046O16+           ACCGGATTATGTCGCACTCTTGGCTCCCCATGCCCGCCGCCGCCGCTGCTTATTAGCTTC
JMFS119C07+           ACCGGATTATGTCGCACTCTTGGCTCCCCATGCCCGCCGCCGCCGCTGCTTATTAGCTTC
JMFS052B04+           ACCGGATTATGTCGCACTCTTGGCTCCCCATGCCCGCCGCCGCCGCTGCTTATTAGCTTC
                      ____________________________________________________________
consensus             ACCGGATTATGTCGCACTCTTGGCTCCCCATGCCCGCCGCCGCCGCTGCTTATTAGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046O16+           TTCAATTCCAGACCGCAAT                                         
JMFS119C07+           TTCAATTCCAGACCGCAATATATATATATATATATATATATATATATATATATATATATA
JMFS052B04+           TTCAATTCCAGACCGCAATATATATATATATATATATATATATATATATATATATATATA
                      ____________________________________________________________
consensus             TTCAATTCCAGACCGCAATATATATATATATATATATATATATATATATATATATATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS119C07+           TATAATGTCAAGGCAATAAGCAAAATTGCTTGGTTGGTTGGTTGGTGAAAGCTAAGACTT
JMFS052B04+           TATAATGTCAAGGCAATAAGCAAAATTGCTTGGTTGGTTGGTTGGTGAAAGCTAAGACTT
                      ____________________________________________________________
consensus             TATAATGTCAAGGCAATAAGCAAAATTGCTTGGTTGGTTGGTTGGTGAAAGCTAAGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS119C07+           TGACATAATTATAATGAGGGAAATTTTTTTTTTTTTTTAAAAAAAATATGTTCGTACGTT
JMFS052B04+           TGACATAATTATAATGAGGGAAA-TTTTTTTTTTTTTTAAAAAAAATATGTTCGTACGTT
                      ____________________________________________________________
consensus             TGACATAATTATAATGAGGGAAATTTTTTTTTTTTTTTAAAAAAAATATGTTCGTACGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS119C07+           AATTTGGGCTCCATTTTCGCAGTGAAGAGCCCACATACATTATAGTAAAAATCTGGTGGC
JMFS052B04+           AATTTGGGCTCCATTTTCGCAGTGAAGAGCCCACATACATTATAGTAAAAATCTGGTGGC
                      ____________________________________________________________
consensus             AATTTGGGCTCCATTTTCGCAGTGAAGAGCCCACATACATTATAGTAAAAATCTGGTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS119C07+           ATGCCAGAGATACTTAATTATCGGATCCATTGATCTAGAACCAG                
JMFS052B04+           ATGCCAGAGATACTTAATTATCGGATCCATTGATCTAGAACCAGAACGTATTGAAGCTAA
                      ____________________________________________________________
consensus             ATGCCAGAGATACTTAATTATCGGATCCATTGATCTAGAACCAGAACGTATTGAAGCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS052B04+           GGATAGAAGAGCTGTCTCCTCATCGCCAATATATTTCAGAAAACTAACGTACGACGCTTT
                      ____________________________________________________________
consensus             GGATAGAAGAGCTGTCTCCTCATCGCCAATATATTTCAGAAAACTAACGTACGACGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS052B04+           GTAGACCACAGGATTACTGTTTGCAAGTTGCTAGCTAAGAGAGAGAGAGAGAGAAGAGGG
                      ____________________________________________________________
consensus             GTAGACCACAGGATTACTGTTTGCAAGTTGCTAGCTAAGAGAGAGAGAGAGAGAAGAGGG